miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16382 5' -62.1 NC_004084.1 + 5549 1.1 0.000225
Target:  5'- aGGCGACCCCUCGGCACCGCUCGAGCAg -3'
miRNA:   3'- -CCGCUGGGGAGCCGUGGCGAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 39853 0.77 0.074699
Target:  5'- cGGCGGCCg--CGGCGCCG-UCGAGCAc -3'
miRNA:   3'- -CCGCUGGggaGCCGUGGCgAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 1818 0.74 0.118163
Target:  5'- cGGCGGCgggUCUCGGuCACCGaUCGAGCAg -3'
miRNA:   3'- -CCGCUGg--GGAGCC-GUGGCgAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 42358 0.74 0.118163
Target:  5'- gGGUGACCgCggUGGUcgcGCUGCUCGAGCAu -3'
miRNA:   3'- -CCGCUGGgGa-GCCG---UGGCGAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 13604 0.72 0.156625
Target:  5'- aGCGACCCCaUCGGUgaaguccucgacugGCCGUggcagCGAGUAg -3'
miRNA:   3'- cCGCUGGGG-AGCCG--------------UGGCGa----GCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 39937 0.71 0.178236
Target:  5'- aGCGugCUCgaCGGCGCCGCggccgccgauggacUCGAGCGc -3'
miRNA:   3'- cCGCugGGGa-GCCGUGGCG--------------AGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 25387 0.71 0.198899
Target:  5'- cGGCGGCCUCUgCGGCuACUGC-CG-GCGc -3'
miRNA:   3'- -CCGCUGGGGA-GCCG-UGGCGaGCuCGU- -5'
16382 5' -62.1 NC_004084.1 + 37012 0.7 0.209203
Target:  5'- cGGCGAUCgCCUCGGUugCG-UCGuaGGCGu -3'
miRNA:   3'- -CCGCUGG-GGAGCCGugGCgAGC--UCGU- -5'
16382 5' -62.1 NC_004084.1 + 16776 0.7 0.214525
Target:  5'- uGGCG-CUCCUC-GCACCGUUCGccgcGGCGu -3'
miRNA:   3'- -CCGCuGGGGAGcCGUGGCGAGC----UCGU- -5'
16382 5' -62.1 NC_004084.1 + 17271 0.7 0.236988
Target:  5'- cGGCGAUgCCCUCGGUggaggcggugGCgGCgguggcggCGAGCAc -3'
miRNA:   3'- -CCGCUG-GGGAGCCG----------UGgCGa-------GCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 8674 0.69 0.255102
Target:  5'- gGGCGACCCaCUCGaGCACCuCgaaGAGgAg -3'
miRNA:   3'- -CCGCUGGG-GAGC-CGUGGcGag-CUCgU- -5'
16382 5' -62.1 NC_004084.1 + 37340 0.69 0.255102
Target:  5'- cGGCGAUCCCgaCGaCGCCcaGCUCGaAGCAc -3'
miRNA:   3'- -CCGCUGGGGa-GCcGUGG--CGAGC-UCGU- -5'
16382 5' -62.1 NC_004084.1 + 50574 0.69 0.267799
Target:  5'- gGGuCGAUCuCCUCGGUcaGuuGCUCGuGCGg -3'
miRNA:   3'- -CC-GCUGG-GGAGCCG--UggCGAGCuCGU- -5'
16382 5' -62.1 NC_004084.1 + 22156 0.69 0.274336
Target:  5'- cGCGAgCgCCUCGGCGCa-CUCGAGg- -3'
miRNA:   3'- cCGCUgG-GGAGCCGUGgcGAGCUCgu -5'
16382 5' -62.1 NC_004084.1 + 58143 0.68 0.281001
Target:  5'- aGGUGGCCUCUCGaaACUGUgccgCGAGCc -3'
miRNA:   3'- -CCGCUGGGGAGCcgUGGCGa---GCUCGu -5'
16382 5' -62.1 NC_004084.1 + 45648 0.68 0.281001
Target:  5'- cGCGaACCCgUCGGCGuacuCCGCuUCGAGg- -3'
miRNA:   3'- cCGC-UGGGgAGCCGU----GGCG-AGCUCgu -5'
16382 5' -62.1 NC_004084.1 + 42447 0.68 0.287793
Target:  5'- uGCGuugcuCCCgCUCGGCcuGgCGCUCGAGUu -3'
miRNA:   3'- cCGCu----GGG-GAGCCG--UgGCGAGCUCGu -5'
16382 5' -62.1 NC_004084.1 + 47050 0.68 0.294714
Target:  5'- cGUGACUaccgcucaCCUCGaGUucgaagcaGCCGCUCGGGCAc -3'
miRNA:   3'- cCGCUGG--------GGAGC-CG--------UGGCGAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 7444 0.68 0.301054
Target:  5'- uGGCGAgaCCUCGGaguCCGacggcgaCUCGAGCGg -3'
miRNA:   3'- -CCGCUggGGAGCCgu-GGC-------GAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 1310 0.68 0.316253
Target:  5'- cGCGAUcgCCCUCGauccCGCCGC-CGAGCc -3'
miRNA:   3'- cCGCUG--GGGAGCc---GUGGCGaGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.