miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16382 5' -62.1 NC_004084.1 + 25387 0.71 0.198899
Target:  5'- cGGCGGCCUCUgCGGCuACUGC-CG-GCGc -3'
miRNA:   3'- -CCGCUGGGGA-GCCG-UGGCGaGCuCGU- -5'
16382 5' -62.1 NC_004084.1 + 26423 0.66 0.422882
Target:  5'- -uCGAgCCCUCcaGGC-CCGCUCuGGCGg -3'
miRNA:   3'- ccGCUgGGGAG--CCGuGGCGAGcUCGU- -5'
16382 5' -62.1 NC_004084.1 + 30858 0.66 0.371032
Target:  5'- gGGCGGCCCgCUCGuCA-CGUUCGAugGCGa -3'
miRNA:   3'- -CCGCUGGG-GAGCcGUgGCGAGCU--CGU- -5'
16382 5' -62.1 NC_004084.1 + 33391 0.66 0.421982
Target:  5'- uGCGAUCuCCUCuggaucgGGCgGCUGCUCGAGa- -3'
miRNA:   3'- cCGCUGG-GGAG-------CCG-UGGCGAGCUCgu -5'
16382 5' -62.1 NC_004084.1 + 35144 0.66 0.422882
Target:  5'- uGGuCGGCCgCUCGGUcuccagaccgaACCGUUCGA-CAu -3'
miRNA:   3'- -CC-GCUGGgGAGCCG-----------UGGCGAGCUcGU- -5'
16382 5' -62.1 NC_004084.1 + 37012 0.7 0.209203
Target:  5'- cGGCGAUCgCCUCGGUugCG-UCGuaGGCGu -3'
miRNA:   3'- -CCGCUGG-GGAGCCGugGCgAGC--UCGU- -5'
16382 5' -62.1 NC_004084.1 + 37130 0.67 0.338957
Target:  5'- aGCGuuuuccGCUUCgUCGGUGCCaGCUCGGGCAu -3'
miRNA:   3'- cCGC------UGGGG-AGCCGUGG-CGAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 37340 0.69 0.255102
Target:  5'- cGGCGAUCCCgaCGaCGCCcaGCUCGaAGCAc -3'
miRNA:   3'- -CCGCUGGGGa-GCcGUGG--CGAGC-UCGU- -5'
16382 5' -62.1 NC_004084.1 + 39853 0.77 0.074699
Target:  5'- cGGCGGCCg--CGGCGCCG-UCGAGCAc -3'
miRNA:   3'- -CCGCUGGggaGCCGUGGCgAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 39937 0.71 0.178236
Target:  5'- aGCGugCUCgaCGGCGCCGCggccgccgauggacUCGAGCGc -3'
miRNA:   3'- cCGCugGGGa-GCCGUGGCG--------------AGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 42348 0.66 0.387827
Target:  5'- aGGCGGCggaaCUCGaGCGCCagGC-CGAGCGg -3'
miRNA:   3'- -CCGCUGgg--GAGC-CGUGG--CGaGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 42358 0.74 0.118163
Target:  5'- gGGUGACCgCggUGGUcgcGCUGCUCGAGCAu -3'
miRNA:   3'- -CCGCUGGgGa-GCCG---UGGCGAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 42447 0.68 0.287793
Target:  5'- uGCGuugcuCCCgCUCGGCcuGgCGCUCGAGUu -3'
miRNA:   3'- cCGCu----GGG-GAGCCG--UgGCGAGCUCGu -5'
16382 5' -62.1 NC_004084.1 + 45648 0.68 0.281001
Target:  5'- cGCGaACCCgUCGGCGuacuCCGCuUCGAGg- -3'
miRNA:   3'- cCGC-UGGGgAGCCGU----GGCG-AGCUCgu -5'
16382 5' -62.1 NC_004084.1 + 47050 0.68 0.294714
Target:  5'- cGUGACUaccgcucaCCUCGaGUucgaagcaGCCGCUCGGGCAc -3'
miRNA:   3'- cCGCUGG--------GGAGC-CG--------UGGCGAGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 50234 0.67 0.331259
Target:  5'- cGCGaACCCCacucugaGGCGUCGCUgGAGCGg -3'
miRNA:   3'- cCGC-UGGGGag-----CCGUGGCGAgCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 50574 0.69 0.267799
Target:  5'- gGGuCGAUCuCCUCGGUcaGuuGCUCGuGCGg -3'
miRNA:   3'- -CC-GCUGG-GGAGCCG--UggCGAGCuCGU- -5'
16382 5' -62.1 NC_004084.1 + 51142 0.66 0.387827
Target:  5'- gGGCGAUCCCgaacgaggaGGCGaucgagacggUCGC-CGAGCAc -3'
miRNA:   3'- -CCGCUGGGGag-------CCGU----------GGCGaGCUCGU- -5'
16382 5' -62.1 NC_004084.1 + 51265 0.66 0.41394
Target:  5'- cGcCGACCUCgacgaUCGGCGCgUGCUCG-GCGa -3'
miRNA:   3'- cC-GCUGGGG-----AGCCGUG-GCGAGCuCGU- -5'
16382 5' -62.1 NC_004084.1 + 55617 0.66 0.422882
Target:  5'- -uCGGCCUCggcgucUGGUACaCGCUCGAGUg -3'
miRNA:   3'- ccGCUGGGGa-----GCCGUG-GCGAGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.