Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16382 | 5' | -62.1 | NC_004084.1 | + | 51265 | 0.66 | 0.41394 |
Target: 5'- cGcCGACCUCgacgaUCGGCGCgUGCUCG-GCGa -3' miRNA: 3'- cC-GCUGGGG-----AGCCGUG-GCGAGCuCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 58143 | 0.68 | 0.281001 |
Target: 5'- aGGUGGCCUCUCGaaACUGUgccgCGAGCc -3' miRNA: 3'- -CCGCUGGGGAGCcgUGGCGa---GCUCGu -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 47050 | 0.68 | 0.294714 |
Target: 5'- cGUGACUaccgcucaCCUCGaGUucgaagcaGCCGCUCGGGCAc -3' miRNA: 3'- cCGCUGG--------GGAGC-CG--------UGGCGAGCUCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 1310 | 0.68 | 0.316253 |
Target: 5'- cGCGAUcgCCCUCGauccCGCCGC-CGAGCc -3' miRNA: 3'- cCGCUG--GGGAGCc---GUGGCGaGCUCGu -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 37130 | 0.67 | 0.338957 |
Target: 5'- aGCGuuuuccGCUUCgUCGGUGCCaGCUCGGGCAu -3' miRNA: 3'- cCGC------UGGGG-AGCCGUGG-CGAGCUCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 5004 | 0.67 | 0.338957 |
Target: 5'- cGGCuggaGCCCCUCGacGUAgUGCUCGAGgAa -3' miRNA: 3'- -CCGc---UGGGGAGC--CGUgGCGAGCUCgU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 42358 | 0.74 | 0.118163 |
Target: 5'- gGGUGACCgCggUGGUcgcGCUGCUCGAGCAu -3' miRNA: 3'- -CCGCUGGgGa-GCCG---UGGCGAGCUCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 1818 | 0.74 | 0.118163 |
Target: 5'- cGGCGGCgggUCUCGGuCACCGaUCGAGCAg -3' miRNA: 3'- -CCGCUGg--GGAGCC-GUGGCgAGCUCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 37012 | 0.7 | 0.209203 |
Target: 5'- cGGCGAUCgCCUCGGUugCG-UCGuaGGCGu -3' miRNA: 3'- -CCGCUGG-GGAGCCGugGCgAGC--UCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 45648 | 0.68 | 0.281001 |
Target: 5'- cGCGaACCCgUCGGCGuacuCCGCuUCGAGg- -3' miRNA: 3'- cCGC-UGGGgAGCCGU----GGCG-AGCUCgu -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 764 | 0.67 | 0.331259 |
Target: 5'- cGCGACucaCCCgCGGC-CUGCUCGuGGCGu -3' miRNA: 3'- cCGCUG---GGGaGCCGuGGCGAGC-UCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 20056 | 0.66 | 0.408631 |
Target: 5'- gGGuCGGCCCCUgCGGCcucgaggaucgcgagACCGUgaUCGGGg- -3' miRNA: 3'- -CC-GCUGGGGA-GCCG---------------UGGCG--AGCUCgu -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 25387 | 0.71 | 0.198899 |
Target: 5'- cGGCGGCCUCUgCGGCuACUGC-CG-GCGc -3' miRNA: 3'- -CCGCUGGGGA-GCCG-UGGCGaGCuCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 22976 | 0.66 | 0.387827 |
Target: 5'- cGCGACCUCUUGGUcCUGgguguuggcCUCGAGUg -3' miRNA: 3'- cCGCUGGGGAGCCGuGGC---------GAGCUCGu -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 42447 | 0.68 | 0.287793 |
Target: 5'- uGCGuugcuCCCgCUCGGCcuGgCGCUCGAGUu -3' miRNA: 3'- cCGCu----GGG-GAGCCG--UgGCGAGCUCGu -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 39937 | 0.71 | 0.178236 |
Target: 5'- aGCGugCUCgaCGGCGCCGCggccgccgauggacUCGAGCGc -3' miRNA: 3'- cCGCugGGGa-GCCGUGGCG--------------AGCUCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 5174 | 0.67 | 0.354739 |
Target: 5'- uGGCGGCCcgCCUgGGCagACCGCUCaccGCc -3' miRNA: 3'- -CCGCUGG--GGAgCCG--UGGCGAGcu-CGu -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 50574 | 0.69 | 0.267799 |
Target: 5'- gGGuCGAUCuCCUCGGUcaGuuGCUCGuGCGg -3' miRNA: 3'- -CC-GCUGG-GGAGCCG--UggCGAGCuCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 51142 | 0.66 | 0.387827 |
Target: 5'- gGGCGAUCCCgaacgaggaGGCGaucgagacggUCGC-CGAGCAc -3' miRNA: 3'- -CCGCUGGGGag-------CCGU----------GGCGaGCUCGU- -5' |
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16382 | 5' | -62.1 | NC_004084.1 | + | 42348 | 0.66 | 0.387827 |
Target: 5'- aGGCGGCggaaCUCGaGCGCCagGC-CGAGCGg -3' miRNA: 3'- -CCGCUGgg--GAGC-CGUGG--CGaGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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