miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16385 3' -56.2 NC_004084.1 + 37118 0.66 0.730968
Target:  5'- cGCGGAGcguGGUGGCuucUCGAcGCGGUCGu -3'
miRNA:   3'- aCGUCUC---CCGCUGc--AGCUcUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 7409 0.66 0.727854
Target:  5'- aGCAaggcgaucgacgacGAGGGCGAUGcCGAcgguGGCGAgaccUCGg -3'
miRNA:   3'- aCGU--------------CUCCCGCUGCaGCU----CUGCU----AGC- -5'
16385 3' -56.2 NC_004084.1 + 44728 0.66 0.724732
Target:  5'- cGCGcuGGGCGggcucggagaucGCGUccgguuggucgcgacCGAGGCGAUCGg -3'
miRNA:   3'- aCGUcuCCCGC------------UGCA---------------GCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 27476 0.66 0.720558
Target:  5'- gGCGuccucGAGcuCGACGUCGAcgaGGCGAUCGa -3'
miRNA:   3'- aCGU-----CUCccGCUGCAGCU---CUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 26870 0.66 0.710064
Target:  5'- uUGuCGGuAGcGCGAUGUCcuccGAGGCGAUCGc -3'
miRNA:   3'- -AC-GUC-UCcCGCUGCAG----CUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 16486 0.66 0.710064
Target:  5'- uUGCucGAGuGGCcgucGCGagCGAGGCGGUCGa -3'
miRNA:   3'- -ACGu-CUC-CCGc---UGCa-GCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 40448 0.66 0.710064
Target:  5'- gGCcGAGGGCGACacCGAcGACGuccacAUCGg -3'
miRNA:   3'- aCGuCUCCCGCUGcaGCU-CUGC-----UAGC- -5'
16385 3' -56.2 NC_004084.1 + 31344 0.66 0.710064
Target:  5'- aGCAGuucgucGuCGACGUCGAGcaucgcGCGAUCGa -3'
miRNA:   3'- aCGUCucc---C-GCUGCAGCUC------UGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 15539 0.66 0.710064
Target:  5'- cUGCAGGuaugauGGaCGACGUCGAcgGGuCGGUCGa -3'
miRNA:   3'- -ACGUCU------CCcGCUGCAGCU--CU-GCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 41833 0.66 0.7069
Target:  5'- cGUAGGGGGUGACGaggcCGAuggugagugaguccGACGAguUCGc -3'
miRNA:   3'- aCGUCUCCCGCUGCa---GCU--------------CUGCU--AGC- -5'
16385 3' -56.2 NC_004084.1 + 1990 0.66 0.699496
Target:  5'- aUGCAGAcuaCGuCGUCGAGgacGCGAUCGa -3'
miRNA:   3'- -ACGUCUcccGCuGCAGCUC---UGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 32022 0.66 0.699496
Target:  5'- aGCGcGccGGCGACGUUGAGuguGGUCGu -3'
miRNA:   3'- aCGU-CucCCGCUGCAGCUCug-CUAGC- -5'
16385 3' -56.2 NC_004084.1 + 4928 0.66 0.688865
Target:  5'- uUGUGGAGGuGCcgGAUGugcUCGcGACGAUCGg -3'
miRNA:   3'- -ACGUCUCC-CG--CUGC---AGCuCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 32934 0.66 0.688865
Target:  5'- aGCAGAGuGGCGuCGU-GAGcACGGUg- -3'
miRNA:   3'- aCGUCUC-CCGCuGCAgCUC-UGCUAgc -5'
16385 3' -56.2 NC_004084.1 + 44759 0.66 0.688865
Target:  5'- cUGCuccaGGuuGGCGAaGaCGAGACGGUCGa -3'
miRNA:   3'- -ACG----UCucCCGCUgCaGCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 20184 0.66 0.678182
Target:  5'- ---cGAGcGUGACGUCGAuaucGACGGUCGu -3'
miRNA:   3'- acguCUCcCGCUGCAGCU----CUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 49651 0.67 0.667457
Target:  5'- aGCuGuGGGCgGugGUCGAcAUGAUCu -3'
miRNA:   3'- aCGuCuCCCG-CugCAGCUcUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 51015 0.67 0.6567
Target:  5'- aGgAGAucaGGGUcgucGACGUCGAGGcCGAUCc -3'
miRNA:   3'- aCgUCU---CCCG----CUGCAGCUCU-GCUAGc -5'
16385 3' -56.2 NC_004084.1 + 34836 0.67 0.644843
Target:  5'- gGCGGAGcaCGACGUCGucguacgAGACGcAUCGc -3'
miRNA:   3'- aCGUCUCccGCUGCAGC-------UCUGC-UAGC- -5'
16385 3' -56.2 NC_004084.1 + 51312 0.67 0.635131
Target:  5'- --aAGAcGGCGAC--CGAGGCGAUCGa -3'
miRNA:   3'- acgUCUcCCGCUGcaGCUCUGCUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.