Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16385 | 3' | -56.2 | NC_004084.1 | + | 20851 | 0.68 | 0.580248 |
Target: 5'- cGCcGAGGGUGgcACGUCGAccgcgccGGCGAUgGa -3' miRNA: 3'- aCGuCUCCCGC--UGCAGCU-------CUGCUAgC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 41397 | 0.67 | 0.613551 |
Target: 5'- gGUAGAGGGCGAgGaggcCGGGAagguagcgacCGAUCu -3' miRNA: 3'- aCGUCUCCCGCUgCa---GCUCU----------GCUAGc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 47993 | 0.67 | 0.624337 |
Target: 5'- aUGCAcGAGGaCGuCGacugCGAGAUGGUCGa -3' miRNA: 3'- -ACGU-CUCCcGCuGCa---GCUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 1590 | 0.67 | 0.635131 |
Target: 5'- gUGUAGAGGuccuCGUCGGGACGG-CGg -3' miRNA: 3'- -ACGUCUCCcgcuGCAGCUCUGCUaGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 51312 | 0.67 | 0.635131 |
Target: 5'- --aAGAcGGCGAC--CGAGGCGAUCGa -3' miRNA: 3'- acgUCUcCCGCUGcaGCUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 34836 | 0.67 | 0.644843 |
Target: 5'- gGCGGAGcaCGACGUCGucguacgAGACGcAUCGc -3' miRNA: 3'- aCGUCUCccGCUGCAGC-------UCUGC-UAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 51015 | 0.67 | 0.6567 |
Target: 5'- aGgAGAucaGGGUcgucGACGUCGAGGcCGAUCc -3' miRNA: 3'- aCgUCU---CCCG----CUGCAGCUCU-GCUAGc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 49651 | 0.67 | 0.667457 |
Target: 5'- aGCuGuGGGCgGugGUCGAcAUGAUCu -3' miRNA: 3'- aCGuCuCCCG-CugCAGCUcUGCUAGc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 20184 | 0.66 | 0.678182 |
Target: 5'- ---cGAGcGUGACGUCGAuaucGACGGUCGu -3' miRNA: 3'- acguCUCcCGCUGCAGCU----CUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 44759 | 0.66 | 0.688865 |
Target: 5'- cUGCuccaGGuuGGCGAaGaCGAGACGGUCGa -3' miRNA: 3'- -ACG----UCucCCGCUgCaGCUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 32934 | 0.66 | 0.688865 |
Target: 5'- aGCAGAGuGGCGuCGU-GAGcACGGUg- -3' miRNA: 3'- aCGUCUC-CCGCuGCAgCUC-UGCUAgc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 4928 | 0.66 | 0.688865 |
Target: 5'- uUGUGGAGGuGCcgGAUGugcUCGcGACGAUCGg -3' miRNA: 3'- -ACGUCUCC-CG--CUGC---AGCuCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 1990 | 0.66 | 0.699496 |
Target: 5'- aUGCAGAcuaCGuCGUCGAGgacGCGAUCGa -3' miRNA: 3'- -ACGUCUcccGCuGCAGCUC---UGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 32022 | 0.66 | 0.699496 |
Target: 5'- aGCGcGccGGCGACGUUGAGuguGGUCGu -3' miRNA: 3'- aCGU-CucCCGCUGCAGCUCug-CUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 41833 | 0.66 | 0.7069 |
Target: 5'- cGUAGGGGGUGACGaggcCGAuggugagugaguccGACGAguUCGc -3' miRNA: 3'- aCGUCUCCCGCUGCa---GCU--------------CUGCU--AGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 16486 | 0.66 | 0.710064 |
Target: 5'- uUGCucGAGuGGCcgucGCGagCGAGGCGGUCGa -3' miRNA: 3'- -ACGu-CUC-CCGc---UGCa-GCUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 26870 | 0.66 | 0.710064 |
Target: 5'- uUGuCGGuAGcGCGAUGUCcuccGAGGCGAUCGc -3' miRNA: 3'- -AC-GUC-UCcCGCUGCAG----CUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 31344 | 0.66 | 0.710064 |
Target: 5'- aGCAGuucgucGuCGACGUCGAGcaucgcGCGAUCGa -3' miRNA: 3'- aCGUCucc---C-GCUGCAGCUC------UGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 15539 | 0.66 | 0.710064 |
Target: 5'- cUGCAGGuaugauGGaCGACGUCGAcgGGuCGGUCGa -3' miRNA: 3'- -ACGUCU------CCcGCUGCAGCU--CU-GCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 40448 | 0.66 | 0.710064 |
Target: 5'- gGCcGAGGGCGACacCGAcGACGuccacAUCGg -3' miRNA: 3'- aCGuCUCCCGCUGcaGCU-CUGC-----UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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