Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16385 | 3' | -56.2 | NC_004084.1 | + | 27476 | 0.66 | 0.720558 |
Target: 5'- gGCGuccucGAGcuCGACGUCGAcgaGGCGAUCGa -3' miRNA: 3'- aCGU-----CUCccGCUGCAGCU---CUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 44728 | 0.66 | 0.724732 |
Target: 5'- cGCGcuGGGCGggcucggagaucGCGUccgguuggucgcgacCGAGGCGAUCGg -3' miRNA: 3'- aCGUcuCCCGC------------UGCA---------------GCUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 7409 | 0.66 | 0.727854 |
Target: 5'- aGCAaggcgaucgacgacGAGGGCGAUGcCGAcgguGGCGAgaccUCGg -3' miRNA: 3'- aCGU--------------CUCCCGCUGCaGCU----CUGCU----AGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 37118 | 0.66 | 0.730968 |
Target: 5'- cGCGGAGcguGGUGGCuucUCGAcGCGGUCGu -3' miRNA: 3'- aCGUCUC---CCGCUGc--AGCUcUGCUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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