miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16385 3' -56.2 NC_004084.1 + 51312 0.67 0.635131
Target:  5'- --aAGAcGGCGAC--CGAGGCGAUCGa -3'
miRNA:   3'- acgUCUcCCGCUGcaGCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 47993 0.67 0.624337
Target:  5'- aUGCAcGAGGaCGuCGacugCGAGAUGGUCGa -3'
miRNA:   3'- -ACGU-CUCCcGCuGCa---GCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 41397 0.67 0.613551
Target:  5'- gGUAGAGGGCGAgGaggcCGGGAagguagcgacCGAUCu -3'
miRNA:   3'- aCGUCUCCCGCUgCa---GCUCU----------GCUAGc -5'
16385 3' -56.2 NC_004084.1 + 20851 0.68 0.580248
Target:  5'- cGCcGAGGGUGgcACGUCGAccgcgccGGCGAUgGa -3'
miRNA:   3'- aCGuCUCCCGC--UGCAGCU-------CUGCUAgC- -5'
16385 3' -56.2 NC_004084.1 + 39614 0.68 0.560017
Target:  5'- cGUGGccGGCGACGUCcucgacGAGuCGAUCGu -3'
miRNA:   3'- aCGUCucCCGCUGCAG------CUCuGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 43691 0.69 0.549447
Target:  5'- cGaCGGAcGGGCG-CGUCGAcgaaGugGAUCa -3'
miRNA:   3'- aC-GUCU-CCCGCuGCAGCU----CugCUAGc -5'
16385 3' -56.2 NC_004084.1 + 51510 0.69 0.549447
Target:  5'- --gAGuGGGagcuCGUCGAGACGGUCGc -3'
miRNA:   3'- acgUCuCCCgcu-GCAGCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 5345 0.69 0.549447
Target:  5'- cGCcGAgcGGGCGGCGaggacUGGGACGAUCu -3'
miRNA:   3'- aCGuCU--CCCGCUGCa----GCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 35316 0.69 0.53894
Target:  5'- -cCAGAGGugguCGACGUCGAucGCGAUCGu -3'
miRNA:   3'- acGUCUCCc---GCUGCAGCUc-UGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 17674 0.69 0.528502
Target:  5'- aGCAcAGGGCGACGcuggucgagcuUCGAGACGc--- -3'
miRNA:   3'- aCGUcUCCCGCUGC-----------AGCUCUGCuagc -5'
16385 3' -56.2 NC_004084.1 + 5195 0.69 0.528502
Target:  5'- gGUAGAcGaGGCGgcaggcagcACGcUCGAGACGAUCa -3'
miRNA:   3'- aCGUCU-C-CCGC---------UGC-AGCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 56823 0.69 0.518139
Target:  5'- aGCAGAgcucccagccGGGCGACGUCGuccuGGACccguUCGc -3'
miRNA:   3'- aCGUCU----------CCCGCUGCAGC----UCUGcu--AGC- -5'
16385 3' -56.2 NC_004084.1 + 35909 0.69 0.507858
Target:  5'- cGCuGGAGuGGCcGCGUCGAGugGAc-- -3'
miRNA:   3'- aCG-UCUC-CCGcUGCAGCUCugCUagc -5'
16385 3' -56.2 NC_004084.1 + 17296 0.69 0.497665
Target:  5'- gGCGGcGGuGGCGGCGagcacaUCGAGAuuaCGAUCGa -3'
miRNA:   3'- aCGUC-UC-CCGCUGC------AGCUCU---GCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 51137 0.7 0.481551
Target:  5'- cGCuu-GGGCGaucccgaacgaggagGCGaUCGAGACGGUCGc -3'
miRNA:   3'- aCGucuCCCGC---------------UGC-AGCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 7466 0.7 0.477562
Target:  5'- gGCGacucGAGcGGCGACGgcgaaggCGAGACGAgcaagUCGg -3'
miRNA:   3'- aCGU----CUC-CCGCUGCa------GCUCUGCU-----AGC- -5'
16385 3' -56.2 NC_004084.1 + 52643 0.7 0.448185
Target:  5'- gGguGAGugccucggcugcGGCGAgacggagaucguCGUCGAGGCGAUCa -3'
miRNA:   3'- aCguCUC------------CCGCU------------GCAGCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 52586 0.72 0.383781
Target:  5'- cUGCGGc-GGCGugGUCcGGugGGUCGa -3'
miRNA:   3'- -ACGUCucCCGCugCAGcUCugCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 56924 0.73 0.310501
Target:  5'- aGCucGAGGGCGACGUCuaccagGAGGucguCGAUCGc -3'
miRNA:   3'- aCGu-CUCCCGCUGCAG------CUCU----GCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 57487 0.74 0.261223
Target:  5'- aGCucGccGGCGACGUCGAcGCGAUCGg -3'
miRNA:   3'- aCGu-CucCCGCUGCAGCUcUGCUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.