miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16385 3' -56.2 NC_004084.1 + 1590 0.67 0.635131
Target:  5'- gUGUAGAGGuccuCGUCGGGACGG-CGg -3'
miRNA:   3'- -ACGUCUCCcgcuGCAGCUCUGCUaGC- -5'
16385 3' -56.2 NC_004084.1 + 1990 0.66 0.699496
Target:  5'- aUGCAGAcuaCGuCGUCGAGgacGCGAUCGa -3'
miRNA:   3'- -ACGUCUcccGCuGCAGCUC---UGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 4928 0.66 0.688865
Target:  5'- uUGUGGAGGuGCcgGAUGugcUCGcGACGAUCGg -3'
miRNA:   3'- -ACGUCUCC-CG--CUGC---AGCuCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 5195 0.69 0.528502
Target:  5'- gGUAGAcGaGGCGgcaggcagcACGcUCGAGACGAUCa -3'
miRNA:   3'- aCGUCU-C-CCGC---------UGC-AGCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 5345 0.69 0.549447
Target:  5'- cGCcGAgcGGGCGGCGaggacUGGGACGAUCu -3'
miRNA:   3'- aCGuCU--CCCGCUGCa----GCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 7409 0.66 0.727854
Target:  5'- aGCAaggcgaucgacgacGAGGGCGAUGcCGAcgguGGCGAgaccUCGg -3'
miRNA:   3'- aCGU--------------CUCCCGCUGCaGCU----CUGCU----AGC- -5'
16385 3' -56.2 NC_004084.1 + 7466 0.7 0.477562
Target:  5'- gGCGacucGAGcGGCGACGgcgaaggCGAGACGAgcaagUCGg -3'
miRNA:   3'- aCGU----CUC-CCGCUGCa------GCUCUGCU-----AGC- -5'
16385 3' -56.2 NC_004084.1 + 8232 1.09 0.000962
Target:  5'- uUGCAGAGGGCGACGUCGAGACGAUCGa -3'
miRNA:   3'- -ACGUCUCCCGCUGCAGCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 9057 0.76 0.218504
Target:  5'- gGUAGAgucGGGCGACGUCGA--CGAUCa -3'
miRNA:   3'- aCGUCU---CCCGCUGCAGCUcuGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 15539 0.66 0.710064
Target:  5'- cUGCAGGuaugauGGaCGACGUCGAcgGGuCGGUCGa -3'
miRNA:   3'- -ACGUCU------CCcGCUGCAGCU--CU-GCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 16486 0.66 0.710064
Target:  5'- uUGCucGAGuGGCcgucGCGagCGAGGCGGUCGa -3'
miRNA:   3'- -ACGu-CUC-CCGc---UGCa-GCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 17296 0.69 0.497665
Target:  5'- gGCGGcGGuGGCGGCGagcacaUCGAGAuuaCGAUCGa -3'
miRNA:   3'- aCGUC-UC-CCGCUGC------AGCUCU---GCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 17674 0.69 0.528502
Target:  5'- aGCAcAGGGCGACGcuggucgagcuUCGAGACGc--- -3'
miRNA:   3'- aCGUcUCCCGCUGC-----------AGCUCUGCuagc -5'
16385 3' -56.2 NC_004084.1 + 19838 0.75 0.242134
Target:  5'- aGCGGAGGGUGacuuccGCGUCGAGgGCGGUa- -3'
miRNA:   3'- aCGUCUCCCGC------UGCAGCUC-UGCUAgc -5'
16385 3' -56.2 NC_004084.1 + 20184 0.66 0.678182
Target:  5'- ---cGAGcGUGACGUCGAuaucGACGGUCGu -3'
miRNA:   3'- acguCUCcCGCUGCAGCU----CUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 20851 0.68 0.580248
Target:  5'- cGCcGAGGGUGgcACGUCGAccgcgccGGCGAUgGa -3'
miRNA:   3'- aCGuCUCCCGC--UGCAGCU-------CUGCUAgC- -5'
16385 3' -56.2 NC_004084.1 + 21985 0.77 0.181899
Target:  5'- gUGCAGAcGGCGuACGUCGAcGACGcgCGg -3'
miRNA:   3'- -ACGUCUcCCGC-UGCAGCU-CUGCuaGC- -5'
16385 3' -56.2 NC_004084.1 + 26870 0.66 0.710064
Target:  5'- uUGuCGGuAGcGCGAUGUCcuccGAGGCGAUCGc -3'
miRNA:   3'- -AC-GUC-UCcCGCUGCAG----CUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 27476 0.66 0.720558
Target:  5'- gGCGuccucGAGcuCGACGUCGAcgaGGCGAUCGa -3'
miRNA:   3'- aCGU-----CUCccGCUGCAGCU---CUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 31344 0.66 0.710064
Target:  5'- aGCAGuucgucGuCGACGUCGAGcaucgcGCGAUCGa -3'
miRNA:   3'- aCGUCucc---C-GCUGCAGCUC------UGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.