Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16385 | 3' | -56.2 | NC_004084.1 | + | 35316 | 0.69 | 0.53894 |
Target: 5'- -cCAGAGGugguCGACGUCGAucGCGAUCGu -3' miRNA: 3'- acGUCUCCc---GCUGCAGCUc-UGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 34836 | 0.67 | 0.644843 |
Target: 5'- gGCGGAGcaCGACGUCGucguacgAGACGcAUCGc -3' miRNA: 3'- aCGUCUCccGCUGCAGC-------UCUGC-UAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 32934 | 0.66 | 0.688865 |
Target: 5'- aGCAGAGuGGCGuCGU-GAGcACGGUg- -3' miRNA: 3'- aCGUCUC-CCGCuGCAgCUC-UGCUAgc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 32022 | 0.66 | 0.699496 |
Target: 5'- aGCGcGccGGCGACGUUGAGuguGGUCGu -3' miRNA: 3'- aCGU-CucCCGCUGCAGCUCug-CUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 31344 | 0.66 | 0.710064 |
Target: 5'- aGCAGuucgucGuCGACGUCGAGcaucgcGCGAUCGa -3' miRNA: 3'- aCGUCucc---C-GCUGCAGCUC------UGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 27476 | 0.66 | 0.720558 |
Target: 5'- gGCGuccucGAGcuCGACGUCGAcgaGGCGAUCGa -3' miRNA: 3'- aCGU-----CUCccGCUGCAGCU---CUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 26870 | 0.66 | 0.710064 |
Target: 5'- uUGuCGGuAGcGCGAUGUCcuccGAGGCGAUCGc -3' miRNA: 3'- -AC-GUC-UCcCGCUGCAG----CUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 21985 | 0.77 | 0.181899 |
Target: 5'- gUGCAGAcGGCGuACGUCGAcGACGcgCGg -3' miRNA: 3'- -ACGUCUcCCGC-UGCAGCU-CUGCuaGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 20851 | 0.68 | 0.580248 |
Target: 5'- cGCcGAGGGUGgcACGUCGAccgcgccGGCGAUgGa -3' miRNA: 3'- aCGuCUCCCGC--UGCAGCU-------CUGCUAgC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 20184 | 0.66 | 0.678182 |
Target: 5'- ---cGAGcGUGACGUCGAuaucGACGGUCGu -3' miRNA: 3'- acguCUCcCGCUGCAGCU----CUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 19838 | 0.75 | 0.242134 |
Target: 5'- aGCGGAGGGUGacuuccGCGUCGAGgGCGGUa- -3' miRNA: 3'- aCGUCUCCCGC------UGCAGCUC-UGCUAgc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 17674 | 0.69 | 0.528502 |
Target: 5'- aGCAcAGGGCGACGcuggucgagcuUCGAGACGc--- -3' miRNA: 3'- aCGUcUCCCGCUGC-----------AGCUCUGCuagc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 17296 | 0.69 | 0.497665 |
Target: 5'- gGCGGcGGuGGCGGCGagcacaUCGAGAuuaCGAUCGa -3' miRNA: 3'- aCGUC-UC-CCGCUGC------AGCUCU---GCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 16486 | 0.66 | 0.710064 |
Target: 5'- uUGCucGAGuGGCcgucGCGagCGAGGCGGUCGa -3' miRNA: 3'- -ACGu-CUC-CCGc---UGCa-GCUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 15539 | 0.66 | 0.710064 |
Target: 5'- cUGCAGGuaugauGGaCGACGUCGAcgGGuCGGUCGa -3' miRNA: 3'- -ACGUCU------CCcGCUGCAGCU--CU-GCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 9057 | 0.76 | 0.218504 |
Target: 5'- gGUAGAgucGGGCGACGUCGA--CGAUCa -3' miRNA: 3'- aCGUCU---CCCGCUGCAGCUcuGCUAGc -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 8232 | 1.09 | 0.000962 |
Target: 5'- uUGCAGAGGGCGACGUCGAGACGAUCGa -3' miRNA: 3'- -ACGUCUCCCGCUGCAGCUCUGCUAGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 7466 | 0.7 | 0.477562 |
Target: 5'- gGCGacucGAGcGGCGACGgcgaaggCGAGACGAgcaagUCGg -3' miRNA: 3'- aCGU----CUC-CCGCUGCa------GCUCUGCU-----AGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 7409 | 0.66 | 0.727854 |
Target: 5'- aGCAaggcgaucgacgacGAGGGCGAUGcCGAcgguGGCGAgaccUCGg -3' miRNA: 3'- aCGU--------------CUCCCGCUGCaGCU----CUGCU----AGC- -5' |
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16385 | 3' | -56.2 | NC_004084.1 | + | 5345 | 0.69 | 0.549447 |
Target: 5'- cGCcGAgcGGGCGGCGaggacUGGGACGAUCu -3' miRNA: 3'- aCGuCU--CCCGCUGCa----GCUCUGCUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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