miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16385 3' -56.2 NC_004084.1 + 44728 0.66 0.724732
Target:  5'- cGCGcuGGGCGggcucggagaucGCGUccgguuggucgcgacCGAGGCGAUCGg -3'
miRNA:   3'- aCGUcuCCCGC------------UGCA---------------GCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 20184 0.66 0.678182
Target:  5'- ---cGAGcGUGACGUCGAuaucGACGGUCGu -3'
miRNA:   3'- acguCUCcCGCUGCAGCU----CUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 1590 0.67 0.635131
Target:  5'- gUGUAGAGGuccuCGUCGGGACGG-CGg -3'
miRNA:   3'- -ACGUCUCCcgcuGCAGCUCUGCUaGC- -5'
16385 3' -56.2 NC_004084.1 + 4928 0.66 0.688865
Target:  5'- uUGUGGAGGuGCcgGAUGugcUCGcGACGAUCGg -3'
miRNA:   3'- -ACGUCUCC-CG--CUGC---AGCuCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 51015 0.67 0.6567
Target:  5'- aGgAGAucaGGGUcgucGACGUCGAGGcCGAUCc -3'
miRNA:   3'- aCgUCU---CCCG----CUGCAGCUCU-GCUAGc -5'
16385 3' -56.2 NC_004084.1 + 35316 0.69 0.53894
Target:  5'- -cCAGAGGugguCGACGUCGAucGCGAUCGu -3'
miRNA:   3'- acGUCUCCc---GCUGCAGCUc-UGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 57487 0.74 0.261223
Target:  5'- aGCucGccGGCGACGUCGAcGCGAUCGg -3'
miRNA:   3'- aCGu-CucCCGCUGCAGCUcUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 32022 0.66 0.699496
Target:  5'- aGCGcGccGGCGACGUUGAGuguGGUCGu -3'
miRNA:   3'- aCGU-CucCCGCUGCAGCUCug-CUAGC- -5'
16385 3' -56.2 NC_004084.1 + 16486 0.66 0.710064
Target:  5'- uUGCucGAGuGGCcgucGCGagCGAGGCGGUCGa -3'
miRNA:   3'- -ACGu-CUC-CCGc---UGCa-GCUCUGCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 41397 0.67 0.613551
Target:  5'- gGUAGAGGGCGAgGaggcCGGGAagguagcgacCGAUCu -3'
miRNA:   3'- aCGUCUCCCGCUgCa---GCUCU----------GCUAGc -5'
16385 3' -56.2 NC_004084.1 + 5345 0.69 0.549447
Target:  5'- cGCcGAgcGGGCGGCGaggacUGGGACGAUCu -3'
miRNA:   3'- aCGuCU--CCCGCUGCa----GCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 5195 0.69 0.528502
Target:  5'- gGUAGAcGaGGCGgcaggcagcACGcUCGAGACGAUCa -3'
miRNA:   3'- aCGUCU-C-CCGC---------UGC-AGCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 17674 0.69 0.528502
Target:  5'- aGCAcAGGGCGACGcuggucgagcuUCGAGACGc--- -3'
miRNA:   3'- aCGUcUCCCGCUGC-----------AGCUCUGCuagc -5'
16385 3' -56.2 NC_004084.1 + 56823 0.69 0.518139
Target:  5'- aGCAGAgcucccagccGGGCGACGUCGuccuGGACccguUCGc -3'
miRNA:   3'- aCGUCU----------CCCGCUGCAGC----UCUGcu--AGC- -5'
16385 3' -56.2 NC_004084.1 + 35909 0.69 0.507858
Target:  5'- cGCuGGAGuGGCcGCGUCGAGugGAc-- -3'
miRNA:   3'- aCG-UCUC-CCGcUGCAGCUCugCUagc -5'
16385 3' -56.2 NC_004084.1 + 17296 0.69 0.497665
Target:  5'- gGCGGcGGuGGCGGCGagcacaUCGAGAuuaCGAUCGa -3'
miRNA:   3'- aCGUC-UC-CCGCUGC------AGCUCU---GCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 52643 0.7 0.448185
Target:  5'- gGguGAGugccucggcugcGGCGAgacggagaucguCGUCGAGGCGAUCa -3'
miRNA:   3'- aCguCUC------------CCGCU------------GCAGCUCUGCUAGc -5'
16385 3' -56.2 NC_004084.1 + 52586 0.72 0.383781
Target:  5'- cUGCGGc-GGCGugGUCcGGugGGUCGa -3'
miRNA:   3'- -ACGUCucCCGCugCAGcUCugCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 56924 0.73 0.310501
Target:  5'- aGCucGAGGGCGACGUCuaccagGAGGucguCGAUCGc -3'
miRNA:   3'- aCGu-CUCCCGCUGCAG------CUCU----GCUAGC- -5'
16385 3' -56.2 NC_004084.1 + 9057 0.76 0.218504
Target:  5'- gGUAGAgucGGGCGACGUCGA--CGAUCa -3'
miRNA:   3'- aCGUCU---CCCGCUGCAGCUcuGCUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.