miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16385 5' -52.9 NC_004084.1 + 53052 0.65 0.88068
Target:  5'- cACGGCGUCCgcaguaaacgaGACGucCGACCUCa- -3'
miRNA:   3'- cUGCUGUAGGag---------CUGUu-GCUGGAGca -5'
16385 5' -52.9 NC_004084.1 + 30146 0.66 0.87528
Target:  5'- cGCGGCAgCCUCGACGgcuggcacaacgacGCGAgcggcccccgcgagaCCUCGa -3'
miRNA:   3'- cUGCUGUaGGAGCUGU--------------UGCU---------------GGAGCa -5'
16385 5' -52.9 NC_004084.1 + 57086 0.66 0.874499
Target:  5'- cGGCGucgcCAUUCUCGGCGucgcCGuCCUCGg -3'
miRNA:   3'- -CUGCu---GUAGGAGCUGUu---GCuGGAGCa -5'
16385 5' -52.9 NC_004084.1 + 53400 0.66 0.874499
Target:  5'- gGGCGGCuaccaacUCCUCGAg---GACCUCGUc -3'
miRNA:   3'- -CUGCUGu------AGGAGCUguugCUGGAGCA- -5'
16385 5' -52.9 NC_004084.1 + 34794 0.66 0.874499
Target:  5'- gGAUGACG-CCUCGACGggccugACG-CUUCGa -3'
miRNA:   3'- -CUGCUGUaGGAGCUGU------UGCuGGAGCa -5'
16385 5' -52.9 NC_004084.1 + 12229 0.66 0.874499
Target:  5'- uGCGACAUCCaucgcuUCGuCGACGGagUCGUa -3'
miRNA:   3'- cUGCUGUAGG------AGCuGUUGCUggAGCA- -5'
16385 5' -52.9 NC_004084.1 + 9066 0.66 0.874499
Target:  5'- gGGCGACG---UCGACGAUcACCUCGa -3'
miRNA:   3'- -CUGCUGUaggAGCUGUUGcUGGAGCa -5'
16385 5' -52.9 NC_004084.1 + 54215 0.66 0.869756
Target:  5'- aACGGCGUCaggugcuggaagcCGACGGCGACCUgGc -3'
miRNA:   3'- cUGCUGUAGga-----------GCUGUUGCUGGAgCa -5'
16385 5' -52.9 NC_004084.1 + 23255 0.66 0.86735
Target:  5'- cGACGACAaggUCCUCuuugggauguacccCGAgGACCUCGa -3'
miRNA:   3'- -CUGCUGU---AGGAGcu------------GUUgCUGGAGCa -5'
16385 5' -52.9 NC_004084.1 + 28135 0.66 0.866544
Target:  5'- aAUGACGUCCUCGucuCGAU-ACUUCGg -3'
miRNA:   3'- cUGCUGUAGGAGCu--GUUGcUGGAGCa -5'
16385 5' -52.9 NC_004084.1 + 49146 0.66 0.865735
Target:  5'- aGGCGACGUUCgaugCGuucacgaACGACGACCcCGa -3'
miRNA:   3'- -CUGCUGUAGGa---GC-------UGUUGCUGGaGCa -5'
16385 5' -52.9 NC_004084.1 + 57898 0.66 0.861652
Target:  5'- uGAgGACGcCCUCGAguugaucguugaagcUGGCGAUCUCGUc -3'
miRNA:   3'- -CUgCUGUaGGAGCU---------------GUUGCUGGAGCA- -5'
16385 5' -52.9 NC_004084.1 + 53221 0.66 0.859174
Target:  5'- cGACGACGUCC-CG-CAGCGGaugguccgccauccaCUCGg -3'
miRNA:   3'- -CUGCUGUAGGaGCuGUUGCUg--------------GAGCa -5'
16385 5' -52.9 NC_004084.1 + 40423 0.66 0.858343
Target:  5'- cGAUGuGCcgCCcuUCGAgGACGAUCUCGg -3'
miRNA:   3'- -CUGC-UGuaGG--AGCUgUUGCUGGAGCa -5'
16385 5' -52.9 NC_004084.1 + 21849 0.66 0.858343
Target:  5'- uACGGC-UCCUCGAUcuCGACaUCGg -3'
miRNA:   3'- cUGCUGuAGGAGCUGuuGCUGgAGCa -5'
16385 5' -52.9 NC_004084.1 + 53280 0.66 0.858343
Target:  5'- gGGCGACGUCCU-GGCGACcaGCCgCGa -3'
miRNA:   3'- -CUGCUGUAGGAgCUGUUGc-UGGaGCa -5'
16385 5' -52.9 NC_004084.1 + 19331 0.66 0.849904
Target:  5'- gGGCGACuGUCUcacucaagcgCGACAGCGACCUg-- -3'
miRNA:   3'- -CUGCUG-UAGGa---------GCUGUUGCUGGAgca -5'
16385 5' -52.9 NC_004084.1 + 2297 0.66 0.849904
Target:  5'- cGACGACA-CUgCGGCGcACGACgUCGa -3'
miRNA:   3'- -CUGCUGUaGGaGCUGU-UGCUGgAGCa -5'
16385 5' -52.9 NC_004084.1 + 51809 0.66 0.849904
Target:  5'- cGACGACGUCCaucUCGAgguCAACG-CCggCGa -3'
miRNA:   3'- -CUGCUGUAGG---AGCU---GUUGCuGGa-GCa -5'
16385 5' -52.9 NC_004084.1 + 40240 0.66 0.849904
Target:  5'- cGAUGACGUCUUCGAaccgguCGACgUUGa -3'
miRNA:   3'- -CUGCUGUAGGAGCUguu---GCUGgAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.