miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 3' -55.1 NC_004084.1 + 44018 0.66 0.787923
Target:  5'- aACUUCGAGAacaUCGcccCGaUCUCGCCGAg -3'
miRNA:   3'- cUGGAGCUCU---AGCu--GCaGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 11897 0.66 0.787923
Target:  5'- cGACCUCGugguucccgaGGAUUGGCa-CCUUAUCGAu -3'
miRNA:   3'- -CUGGAGC----------UCUAGCUGcaGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 48595 0.66 0.778141
Target:  5'- aACC-CGAGAUCGAa--CC-CGCCGAu -3'
miRNA:   3'- cUGGaGCUCUAGCUgcaGGaGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 3126 0.66 0.778141
Target:  5'- -uCCUCGAGggUGGCGaUCaUCGCCGu -3'
miRNA:   3'- cuGGAGCUCuaGCUGC-AGgAGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 9909 0.66 0.777155
Target:  5'- cGACCUCGuagugcuGGAUCGAgaUGUCaaCGCCGu -3'
miRNA:   3'- -CUGGAGC-------UCUAGCU--GCAGgaGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 11729 0.66 0.775178
Target:  5'- cGCCgacCGAcGUCGACGUgcuguacugguuuaCUUCACCGAa -3'
miRNA:   3'- cUGGa--GCUcUAGCUGCA--------------GGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 31220 0.66 0.772201
Target:  5'- aACCUCGAGGUacgcauucagcgucgCGAuCGUCCugagauucUCACCGc -3'
miRNA:   3'- cUGGAGCUCUA---------------GCU-GCAGG--------AGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 43077 0.66 0.768213
Target:  5'- -uCCUCGAucgcGUCGAguUCCUCAUCGAg -3'
miRNA:   3'- cuGGAGCUc---UAGCUgcAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 49174 0.66 0.768213
Target:  5'- cGACCcCGAGAcgcUgGACGcCCUgAUCGAg -3'
miRNA:   3'- -CUGGaGCUCU---AgCUGCaGGAgUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 42745 0.66 0.768213
Target:  5'- uGACgCUCGGGAg-GACGUCgUCggacugcgccGCCGAc -3'
miRNA:   3'- -CUG-GAGCUCUagCUGCAGgAG----------UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 45627 0.66 0.76219
Target:  5'- cGCUUCGAGGuccUCGcgccaacccaucccgGCGUCCUCggagugGCCGAc -3'
miRNA:   3'- cUGGAGCUCU---AGC---------------UGCAGGAG------UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 50778 0.66 0.758148
Target:  5'- -cCCUCGAG---GACGUCCUuCGCCu- -3'
miRNA:   3'- cuGGAGCUCuagCUGCAGGA-GUGGcu -5'
16386 3' -55.1 NC_004084.1 + 16692 0.66 0.758148
Target:  5'- gGGCCUCGAcguuGGUCGcgauCGUCCaggaacUCAUCGGg -3'
miRNA:   3'- -CUGGAGCU----CUAGCu---GCAGG------AGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 10489 0.66 0.758148
Target:  5'- cGGCCUCGA-----GCGUCUUCACaCGAu -3'
miRNA:   3'- -CUGGAGCUcuagcUGCAGGAGUG-GCU- -5'
16386 3' -55.1 NC_004084.1 + 39837 0.66 0.758148
Target:  5'- uGGCgCUCGAGuccAUCGGCGgCCgcggCGCCGu -3'
miRNA:   3'- -CUG-GAGCUC---UAGCUGCaGGa---GUGGCu -5'
16386 3' -55.1 NC_004084.1 + 46184 0.66 0.758148
Target:  5'- cGACCg-GAGAacuccUCGACGagCUgGCCGAg -3'
miRNA:   3'- -CUGGagCUCU-----AGCUGCagGAgUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 30523 0.66 0.758148
Target:  5'- -cCCagCGGGA-CGuCGUCCUCGCCa- -3'
miRNA:   3'- cuGGa-GCUCUaGCuGCAGGAGUGGcu -5'
16386 3' -55.1 NC_004084.1 + 44950 0.66 0.757134
Target:  5'- uACCUCcucagCGACGUCCUCcuggaagucgcggGCCGAu -3'
miRNA:   3'- cUGGAGcucuaGCUGCAGGAG-------------UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 8242 0.66 0.747958
Target:  5'- cGACgUCGAGAcgaUCGACGccgcugacgacaUCCUCGacaaCGAc -3'
miRNA:   3'- -CUGgAGCUCU---AGCUGC------------AGGAGUg---GCU- -5'
16386 3' -55.1 NC_004084.1 + 50597 0.66 0.747958
Target:  5'- cACCUCGAGGcaguUCGuGCGUacgggUUCGCCGAc -3'
miRNA:   3'- cUGGAGCUCU----AGC-UGCAg----GAGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.