Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16386 | 3' | -55.1 | NC_004084.1 | + | 39837 | 0.66 | 0.758148 |
Target: 5'- uGGCgCUCGAGuccAUCGGCGgCCgcggCGCCGu -3' miRNA: 3'- -CUG-GAGCUC---UAGCUGCaGGa---GUGGCu -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 9909 | 0.66 | 0.777155 |
Target: 5'- cGACCUCGuagugcuGGAUCGAgaUGUCaaCGCCGu -3' miRNA: 3'- -CUGGAGC-------UCUAGCU--GCAGgaGUGGCu -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 8242 | 0.66 | 0.747958 |
Target: 5'- cGACgUCGAGAcgaUCGACGccgcugacgacaUCCUCGacaaCGAc -3' miRNA: 3'- -CUGgAGCUCU---AGCUGC------------AGGAGUg---GCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 50597 | 0.66 | 0.747958 |
Target: 5'- cACCUCGAGGcaguUCGuGCGUacgggUUCGCCGAc -3' miRNA: 3'- cUGGAGCUCU----AGC-UGCAg----GAGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 27454 | 0.66 | 0.737653 |
Target: 5'- cGAuCCggagCGGGAgacggUCGGCGUCCUCGagcUCGAc -3' miRNA: 3'- -CU-GGa---GCUCU-----AGCUGCAGGAGU---GGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 3817 | 0.66 | 0.737653 |
Target: 5'- cGACCUCGAuccaGUCuuCGUCgaCGCCGAc -3' miRNA: 3'- -CUGGAGCUc---UAGcuGCAGgaGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 10489 | 0.66 | 0.758148 |
Target: 5'- cGGCCUCGA-----GCGUCUUCACaCGAu -3' miRNA: 3'- -CUGGAGCUcuagcUGCAGGAGUG-GCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 16692 | 0.66 | 0.758148 |
Target: 5'- gGGCCUCGAcguuGGUCGcgauCGUCCaggaacUCAUCGGg -3' miRNA: 3'- -CUGGAGCU----CUAGCu---GCAGG------AGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 46184 | 0.66 | 0.758148 |
Target: 5'- cGACCg-GAGAacuccUCGACGagCUgGCCGAg -3' miRNA: 3'- -CUGGagCUCU-----AGCUGCagGAgUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 45627 | 0.66 | 0.76219 |
Target: 5'- cGCUUCGAGGuccUCGcgccaacccaucccgGCGUCCUCggagugGCCGAc -3' miRNA: 3'- cUGGAGCUCU---AGC---------------UGCAGGAG------UGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 48595 | 0.66 | 0.778141 |
Target: 5'- aACC-CGAGAUCGAa--CC-CGCCGAu -3' miRNA: 3'- cUGGaGCUCUAGCUgcaGGaGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 31220 | 0.66 | 0.772201 |
Target: 5'- aACCUCGAGGUacgcauucagcgucgCGAuCGUCCugagauucUCACCGc -3' miRNA: 3'- cUGGAGCUCUA---------------GCU-GCAGG--------AGUGGCu -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 11897 | 0.66 | 0.787923 |
Target: 5'- cGACCUCGugguucccgaGGAUUGGCa-CCUUAUCGAu -3' miRNA: 3'- -CUGGAGC----------UCUAGCUGcaGGAGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 44018 | 0.66 | 0.787923 |
Target: 5'- aACUUCGAGAacaUCGcccCGaUCUCGCCGAg -3' miRNA: 3'- cUGGAGCUCU---AGCu--GCaGGAGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 3126 | 0.66 | 0.778141 |
Target: 5'- -uCCUCGAGggUGGCGaUCaUCGCCGu -3' miRNA: 3'- cuGGAGCUCuaGCUGC-AGgAGUGGCu -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 11729 | 0.66 | 0.775178 |
Target: 5'- cGCCgacCGAcGUCGACGUgcuguacugguuuaCUUCACCGAa -3' miRNA: 3'- cUGGa--GCUcUAGCUGCA--------------GGAGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 43077 | 0.66 | 0.768213 |
Target: 5'- -uCCUCGAucgcGUCGAguUCCUCAUCGAg -3' miRNA: 3'- cuGGAGCUc---UAGCUgcAGGAGUGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 30523 | 0.66 | 0.758148 |
Target: 5'- -cCCagCGGGA-CGuCGUCCUCGCCa- -3' miRNA: 3'- cuGGa-GCUCUaGCuGCAGGAGUGGcu -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 42745 | 0.66 | 0.768213 |
Target: 5'- uGACgCUCGGGAg-GACGUCgUCggacugcgccGCCGAc -3' miRNA: 3'- -CUG-GAGCUCUagCUGCAGgAG----------UGGCU- -5' |
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16386 | 3' | -55.1 | NC_004084.1 | + | 49174 | 0.66 | 0.768213 |
Target: 5'- cGACCcCGAGAcgcUgGACGcCCUgAUCGAg -3' miRNA: 3'- -CUGGaGCUCU---AgCUGCaGGAgUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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