miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 3' -55.1 NC_004084.1 + 8542 1.09 0.001265
Target:  5'- cGACCUCGAGAUCGACGUCCUCACCGAg -3'
miRNA:   3'- -CUGGAGCUCUAGCUGCAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 51730 0.82 0.097337
Target:  5'- uGACCUCGAGAUgGACGUCgUCgagcagcGCCGAa -3'
miRNA:   3'- -CUGGAGCUCUAgCUGCAGgAG-------UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 5442 0.81 0.125365
Target:  5'- cGACgUCGAGAUCGucccaGUCCUCGCCGc -3'
miRNA:   3'- -CUGgAGCUCUAGCug---CAGGAGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 43291 0.78 0.178461
Target:  5'- cACCagGAGAUCGGCGUC-UCACCGGg -3'
miRNA:   3'- cUGGagCUCUAGCUGCAGgAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 22271 0.76 0.246797
Target:  5'- uGugCUCGgagaacucgccuaccGGGUCGACGUCCUCgagugcGCCGAg -3'
miRNA:   3'- -CugGAGC---------------UCUAGCUGCAGGAG------UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 57825 0.76 0.257047
Target:  5'- --aCUCGAG---GGCGUCCUCACCGAa -3'
miRNA:   3'- cugGAGCUCuagCUGCAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 49811 0.75 0.270346
Target:  5'- cGGCCUCGAGGacagccUCGACGagUUCAUCGAa -3'
miRNA:   3'- -CUGGAGCUCU------AGCUGCagGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 47612 0.75 0.2772
Target:  5'- aGAUCUCGAGGUggucgaagUGACGaaCCUCACCGAc -3'
miRNA:   3'- -CUGGAGCUCUA--------GCUGCa-GGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 16875 0.75 0.284193
Target:  5'- gGAUCUCGAGcgCGGCGUCUgcuCCGAu -3'
miRNA:   3'- -CUGGAGCUCuaGCUGCAGGaguGGCU- -5'
16386 3' -55.1 NC_004084.1 + 51262 0.75 0.284193
Target:  5'- cGACCUCGAcGAUCGgcGCGUgCUCGgCGAc -3'
miRNA:   3'- -CUGGAGCU-CUAGC--UGCAgGAGUgGCU- -5'
16386 3' -55.1 NC_004084.1 + 46817 0.74 0.306005
Target:  5'- cGACCUCcucaAGAUCGAUGUgCUCGcCCGAc -3'
miRNA:   3'- -CUGGAGc---UCUAGCUGCAgGAGU-GGCU- -5'
16386 3' -55.1 NC_004084.1 + 40863 0.74 0.313555
Target:  5'- uGGCCgUCGAGAUCGACGuUCCggaACCa- -3'
miRNA:   3'- -CUGG-AGCUCUAGCUGC-AGGag-UGGcu -5'
16386 3' -55.1 NC_004084.1 + 56333 0.74 0.329077
Target:  5'- cGCCUCGAGggUGAcucgguugaccuCGUCCUCACgGAu -3'
miRNA:   3'- cUGGAGCUCuaGCU------------GCAGGAGUGgCU- -5'
16386 3' -55.1 NC_004084.1 + 19092 0.74 0.337048
Target:  5'- cGAgCUCGGcGUCGuCGUCCUCACuCGAu -3'
miRNA:   3'- -CUgGAGCUcUAGCuGCAGGAGUG-GCU- -5'
16386 3' -55.1 NC_004084.1 + 22348 0.74 0.337048
Target:  5'- uGCCUCGAcugGAUCGACGUCgaCGuCCGGg -3'
miRNA:   3'- cUGGAGCU---CUAGCUGCAGgaGU-GGCU- -5'
16386 3' -55.1 NC_004084.1 + 52972 0.73 0.353408
Target:  5'- uGGCCUCGAGGUCGAUuccaUCCUC-CgGAa -3'
miRNA:   3'- -CUGGAGCUCUAGCUGc---AGGAGuGgCU- -5'
16386 3' -55.1 NC_004084.1 + 25163 0.73 0.370322
Target:  5'- uGACgaCGuccUCGACGUCCUCAUCGAa -3'
miRNA:   3'- -CUGgaGCucuAGCUGCAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 12528 0.73 0.391337
Target:  5'- gGAUCUCGAGAgcuUgcaggugagcgacgaCGACGUCCcguUCACCGAa -3'
miRNA:   3'- -CUGGAGCUCU---A---------------GCUGCAGG---AGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 8626 0.72 0.394018
Target:  5'- cGACUUCGcGAUCGAgaacaccgaggcugUaGUCCUCGCCGAg -3'
miRNA:   3'- -CUGGAGCuCUAGCU--------------G-CAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 31971 0.72 0.405772
Target:  5'- --gCUCGGGAaCGACGUCCUCGugaUCGAc -3'
miRNA:   3'- cugGAGCUCUaGCUGCAGGAGU---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.