miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 3' -55.1 NC_004084.1 + 8242 0.66 0.747958
Target:  5'- cGACgUCGAGAcgaUCGACGccgcugacgacaUCCUCGacaaCGAc -3'
miRNA:   3'- -CUGgAGCUCU---AGCUGC------------AGGAGUg---GCU- -5'
16386 3' -55.1 NC_004084.1 + 27454 0.66 0.737653
Target:  5'- cGAuCCggagCGGGAgacggUCGGCGUCCUCGagcUCGAc -3'
miRNA:   3'- -CU-GGa---GCUCU-----AGCUGCAGGAGU---GGCU- -5'
16386 3' -55.1 NC_004084.1 + 1894 0.66 0.737653
Target:  5'- cGGCgUCGucgccGGUCGGCGagUUCGCCGGa -3'
miRNA:   3'- -CUGgAGCu----CUAGCUGCagGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 17201 0.66 0.737653
Target:  5'- cGACCUC---AUCGACGUCCUggaGCgGAc -3'
miRNA:   3'- -CUGGAGcucUAGCUGCAGGAg--UGgCU- -5'
16386 3' -55.1 NC_004084.1 + 49243 0.66 0.737653
Target:  5'- -gUCUCGGGGUCGuCGUUCgugaacgCAUCGAa -3'
miRNA:   3'- cuGGAGCUCUAGCuGCAGGa------GUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 3817 0.66 0.737653
Target:  5'- cGACCUCGAuccaGUCuuCGUCgaCGCCGAc -3'
miRNA:   3'- -CUGGAGCUc---UAGcuGCAGgaGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 20954 0.67 0.73142
Target:  5'- aGACgCUCGAuuccaucgccggcgcGGUCGACGUgccacCCUCGgCGAg -3'
miRNA:   3'- -CUG-GAGCU---------------CUAGCUGCA-----GGAGUgGCU- -5'
16386 3' -55.1 NC_004084.1 + 21432 0.67 0.727245
Target:  5'- -uUCUCGGuGUCGAgGUCCUCcucgucaguACCGAc -3'
miRNA:   3'- cuGGAGCUcUAGCUgCAGGAG---------UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 6439 0.67 0.727245
Target:  5'- -uUCUCGAGGUCGcgccccuucgucGCGUacaUCGCCGAc -3'
miRNA:   3'- cuGGAGCUCUAGC------------UGCAgg-AGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 32131 0.67 0.727245
Target:  5'- cACCagGAGGUCGacuGCGUCCcgUCGCaCGAg -3'
miRNA:   3'- cUGGagCUCUAGC---UGCAGG--AGUG-GCU- -5'
16386 3' -55.1 NC_004084.1 + 48077 0.67 0.727245
Target:  5'- cAUCUCGcaGUCGACGUCCUCGugcaucCCGc -3'
miRNA:   3'- cUGGAGCucUAGCUGCAGGAGU------GGCu -5'
16386 3' -55.1 NC_004084.1 + 799 0.67 0.727245
Target:  5'- cGACCUCGAGAcgaagcgCGAacUCCUCAacCCGu -3'
miRNA:   3'- -CUGGAGCUCUa------GCUgcAGGAGU--GGCu -5'
16386 3' -55.1 NC_004084.1 + 58009 0.67 0.716745
Target:  5'- cGACgUCcAGAUCGACGaCgUCugCGAc -3'
miRNA:   3'- -CUGgAGcUCUAGCUGCaGgAGugGCU- -5'
16386 3' -55.1 NC_004084.1 + 37105 0.67 0.716745
Target:  5'- --gCUCGGGcaugauccgGUCGACGUCCagCugCGAg -3'
miRNA:   3'- cugGAGCUC---------UAGCUGCAGGa-GugGCU- -5'
16386 3' -55.1 NC_004084.1 + 57817 0.67 0.716745
Target:  5'- cGGCUUCG---UCGACGUCCUCGagCGGu -3'
miRNA:   3'- -CUGGAGCucuAGCUGCAGGAGUg-GCU- -5'
16386 3' -55.1 NC_004084.1 + 30439 0.67 0.706163
Target:  5'- cGAUggCGAGGaCGACGUCC-CGCUGGg -3'
miRNA:   3'- -CUGgaGCUCUaGCUGCAGGaGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 37428 0.67 0.706163
Target:  5'- uGCUUCGAGcUgGGCGUCgucgggaUCGCCGAa -3'
miRNA:   3'- cUGGAGCUCuAgCUGCAGg------AGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 21323 0.67 0.706163
Target:  5'- cGAUCUccagacCGGGAUaaaCGAUGUCgUCACCGGc -3'
miRNA:   3'- -CUGGA------GCUCUA---GCUGCAGgAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 32215 0.67 0.706163
Target:  5'- cGCCUCGAGAugcuccUCGACGa---CGCCGAc -3'
miRNA:   3'- cUGGAGCUCU------AGCUGCaggaGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 28117 0.67 0.695511
Target:  5'- cGCCUCGAcGAgcgcgucaaUGACGUCCUCGucUCGAu -3'
miRNA:   3'- cUGGAGCU-CUa--------GCUGCAGGAGU--GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.