miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 3' -55.1 NC_004084.1 + 372 0.67 0.695511
Target:  5'- cGCCUacCGGGAgaacuucaUCGAUcaCCUCACCGAg -3'
miRNA:   3'- cUGGA--GCUCU--------AGCUGcaGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 799 0.67 0.727245
Target:  5'- cGACCUCGAGAcgaagcgCGAacUCCUCAacCCGu -3'
miRNA:   3'- -CUGGAGCUCUa------GCUgcAGGAGU--GGCu -5'
16386 3' -55.1 NC_004084.1 + 867 0.69 0.576641
Target:  5'- -gUCUCGAGGUCGcGCGUcgCCUCgacgaGCCGAu -3'
miRNA:   3'- cuGGAGCUCUAGC-UGCA--GGAG-----UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 1894 0.66 0.737653
Target:  5'- cGGCgUCGucgccGGUCGGCGagUUCGCCGGa -3'
miRNA:   3'- -CUGgAGCu----CUAGCUGCagGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 2079 0.71 0.482668
Target:  5'- aGCCUCGAGAaCGGCaUCgCUCGCCu- -3'
miRNA:   3'- cUGGAGCUCUaGCUGcAG-GAGUGGcu -5'
16386 3' -55.1 NC_004084.1 + 2782 0.69 0.60252
Target:  5'- cACCUCGAGAUCGaggcgaggaaucgucGCGcguUCCUuUACCGGc -3'
miRNA:   3'- cUGGAGCUCUAGC---------------UGC---AGGA-GUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 3126 0.66 0.778141
Target:  5'- -uCCUCGAGggUGGCGaUCaUCGCCGu -3'
miRNA:   3'- cuGGAGCUCuaGCUGC-AGgAGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 3265 0.71 0.462755
Target:  5'- cGCCUCGu--UC-ACGUCCUCGCCGu -3'
miRNA:   3'- cUGGAGCucuAGcUGCAGGAGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 3817 0.66 0.737653
Target:  5'- cGACCUCGAuccaGUCuuCGUCgaCGCCGAc -3'
miRNA:   3'- -CUGGAGCUc---UAGcuGCAGgaGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 5442 0.81 0.125365
Target:  5'- cGACgUCGAGAUCGucccaGUCCUCGCCGc -3'
miRNA:   3'- -CUGgAGCUCUAGCug---CAGGAGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 5711 0.66 0.747958
Target:  5'- aGCCUCGAGugcuUCaauuuCGUCCUCGgUGAg -3'
miRNA:   3'- cUGGAGCUCu---AGcu---GCAGGAGUgGCU- -5'
16386 3' -55.1 NC_004084.1 + 6439 0.67 0.727245
Target:  5'- -uUCUCGAGGUCGcgccccuucgucGCGUacaUCGCCGAc -3'
miRNA:   3'- cuGGAGCUCUAGC------------UGCAgg-AGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 6869 0.68 0.641566
Target:  5'- uGCCuUCGAGA---ACGUCCcCGCCGAg -3'
miRNA:   3'- cUGG-AGCUCUagcUGCAGGaGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 8242 0.66 0.747958
Target:  5'- cGACgUCGAGAcgaUCGACGccgcugacgacaUCCUCGacaaCGAc -3'
miRNA:   3'- -CUGgAGCUCU---AGCUGC------------AGGAGUg---GCU- -5'
16386 3' -55.1 NC_004084.1 + 8498 0.69 0.565928
Target:  5'- cGCCUCGcccauGAUC-ACGUUgUCGCCGAg -3'
miRNA:   3'- cUGGAGCu----CUAGcUGCAGgAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 8542 1.09 0.001265
Target:  5'- cGACCUCGAGAUCGACGUCCUCACCGAg -3'
miRNA:   3'- -CUGGAGCUCUAGCUGCAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 8626 0.72 0.394018
Target:  5'- cGACUUCGcGAUCGAgaacaccgaggcugUaGUCCUCGCCGAg -3'
miRNA:   3'- -CUGGAGCuCUAGCU--------------G-CAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 9799 0.69 0.598195
Target:  5'- gGGCCUCGAauccggCGACGUCCUU-UCGAg -3'
miRNA:   3'- -CUGGAGCUcua---GCUGCAGGAGuGGCU- -5'
16386 3' -55.1 NC_004084.1 + 9909 0.66 0.777155
Target:  5'- cGACCUCGuagugcuGGAUCGAgaUGUCaaCGCCGu -3'
miRNA:   3'- -CUGGAGC-------UCUAGCU--GCAGgaGUGGCu -5'
16386 3' -55.1 NC_004084.1 + 10489 0.66 0.758148
Target:  5'- cGGCCUCGA-----GCGUCUUCACaCGAu -3'
miRNA:   3'- -CUGGAGCUcuagcUGCAGGAGUG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.