miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 3' -55.1 NC_004084.1 + 52703 0.7 0.555266
Target:  5'- gGACCUCGGcccGAgCGACGUCCUCGa--- -3'
miRNA:   3'- -CUGGAGCU---CUaGCUGCAGGAGUggcu -5'
16386 3' -55.1 NC_004084.1 + 49249 0.72 0.43372
Target:  5'- uGACUgaaGAGAUCGACGUCCacgUCACggCGAc -3'
miRNA:   3'- -CUGGag-CUCUAGCUGCAGG---AGUG--GCU- -5'
16386 3' -55.1 NC_004084.1 + 21931 0.71 0.460788
Target:  5'- cGACgUCGAGGaaauugUCGGCGUCCggacgacgucucCGCCGAg -3'
miRNA:   3'- -CUGgAGCUCU------AGCUGCAGGa-----------GUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 50928 0.71 0.462755
Target:  5'- cGGCCUCGAcGUCGACGacccugaucUCCUCcUCGAc -3'
miRNA:   3'- -CUGGAGCUcUAGCUGC---------AGGAGuGGCU- -5'
16386 3' -55.1 NC_004084.1 + 2079 0.71 0.482668
Target:  5'- aGCCUCGAGAaCGGCaUCgCUCGCCu- -3'
miRNA:   3'- cUGGAGCUCUaGCUGcAG-GAGUGGcu -5'
16386 3' -55.1 NC_004084.1 + 21330 0.71 0.4867
Target:  5'- aGACCUCGAGGUCGguacugacgaggaggACcUCgaCACCGAg -3'
miRNA:   3'- -CUGGAGCUCUAGC---------------UGcAGgaGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 47651 0.7 0.523666
Target:  5'- cGGCgUCGAGGUCGGCGacgCCccCACUGGc -3'
miRNA:   3'- -CUGgAGCUCUAGCUGCa--GGa-GUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 32066 0.7 0.523666
Target:  5'- --aCUCGcuguUCGACGUCCUCcCCGAa -3'
miRNA:   3'- cugGAGCucu-AGCUGCAGGAGuGGCU- -5'
16386 3' -55.1 NC_004084.1 + 21901 0.7 0.534128
Target:  5'- cGGCgUCucGGUCGGCcUCCUCAUCGAg -3'
miRNA:   3'- -CUGgAGcuCUAGCUGcAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 31971 0.72 0.405772
Target:  5'- --gCUCGGGAaCGACGUCCUCGugaUCGAc -3'
miRNA:   3'- cugGAGCUCUaGCUGCAGGAGU---GGCU- -5'
16386 3' -55.1 NC_004084.1 + 8626 0.72 0.394018
Target:  5'- cGACUUCGcGAUCGAgaacaccgaggcugUaGUCCUCGCCGAg -3'
miRNA:   3'- -CUGGAGCuCUAGCU--------------G-CAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 12528 0.73 0.391337
Target:  5'- gGAUCUCGAGAgcuUgcaggugagcgacgaCGACGUCCcguUCACCGAa -3'
miRNA:   3'- -CUGGAGCUCU---A---------------GCUGCAGG---AGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 51730 0.82 0.097337
Target:  5'- uGACCUCGAGAUgGACGUCgUCgagcagcGCCGAa -3'
miRNA:   3'- -CUGGAGCUCUAgCUGCAGgAG-------UGGCU- -5'
16386 3' -55.1 NC_004084.1 + 57825 0.76 0.257047
Target:  5'- --aCUCGAG---GGCGUCCUCACCGAa -3'
miRNA:   3'- cugGAGCUCuagCUGCAGGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 49811 0.75 0.270346
Target:  5'- cGGCCUCGAGGacagccUCGACGagUUCAUCGAa -3'
miRNA:   3'- -CUGGAGCUCU------AGCUGCagGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 47612 0.75 0.2772
Target:  5'- aGAUCUCGAGGUggucgaagUGACGaaCCUCACCGAc -3'
miRNA:   3'- -CUGGAGCUCUA--------GCUGCa-GGAGUGGCU- -5'
16386 3' -55.1 NC_004084.1 + 16875 0.75 0.284193
Target:  5'- gGAUCUCGAGcgCGGCGUCUgcuCCGAu -3'
miRNA:   3'- -CUGGAGCUCuaGCUGCAGGaguGGCU- -5'
16386 3' -55.1 NC_004084.1 + 40863 0.74 0.313555
Target:  5'- uGGCCgUCGAGAUCGACGuUCCggaACCa- -3'
miRNA:   3'- -CUGG-AGCUCUAGCUGC-AGGag-UGGcu -5'
16386 3' -55.1 NC_004084.1 + 56333 0.74 0.329077
Target:  5'- cGCCUCGAGggUGAcucgguugaccuCGUCCUCACgGAu -3'
miRNA:   3'- cUGGAGCUCuaGCU------------GCAGGAGUGgCU- -5'
16386 3' -55.1 NC_004084.1 + 25163 0.73 0.370322
Target:  5'- uGACgaCGuccUCGACGUCCUCAUCGAa -3'
miRNA:   3'- -CUGgaGCucuAGCUGCAGGAGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.