miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 5' -59.8 NC_004084.1 + 10390 0.66 0.546521
Target:  5'- aGGcGAuCGAGCGCGAagaaCUCCGCGa-- -3'
miRNA:   3'- -CCaCUcGCUCGCGCUg---GAGGUGCggg -5'
16386 5' -59.8 NC_004084.1 + 57024 0.66 0.536296
Target:  5'- -aUGcGGCGAuCGaCGACCUCCugguagacguCGCCCu -3'
miRNA:   3'- ccAC-UCGCUcGC-GCUGGAGGu---------GCGGG- -5'
16386 5' -59.8 NC_004084.1 + 32699 0.66 0.526139
Target:  5'- aGGUG-GCGAGCGacgucgagguaGACugaCUCCAUGUCg -3'
miRNA:   3'- -CCACuCGCUCGCg----------CUG---GAGGUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 22992 0.66 0.526139
Target:  5'- --cGGGaucccaccCGAuCGCGACCUCUugGUCCu -3'
miRNA:   3'- ccaCUC--------GCUcGCGCUGGAGGugCGGG- -5'
16386 5' -59.8 NC_004084.1 + 5087 0.66 0.50605
Target:  5'- cGGUGAGCGgucugcccaGGCGgGccGCCagCugGCCg -3'
miRNA:   3'- -CCACUCGC---------UCGCgC--UGGagGugCGGg -5'
16386 5' -59.8 NC_004084.1 + 23821 0.66 0.50605
Target:  5'- cGGUGAGCGucuccaccGuCGCGauggaggcagucGCCgCCAgCGCCCu -3'
miRNA:   3'- -CCACUCGCu-------C-GCGC------------UGGaGGU-GCGGG- -5'
16386 5' -59.8 NC_004084.1 + 19837 0.66 0.496129
Target:  5'- ---cAGCgGAGgGUGACUUCCGCGUCg -3'
miRNA:   3'- ccacUCG-CUCgCGCUGGAGGUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 5348 0.66 0.495141
Target:  5'- --cGAGCGGGCGgcgaggacugggaCGAUCUCgACGUCg -3'
miRNA:   3'- ccaCUCGCUCGC-------------GCUGGAGgUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 43196 0.67 0.486297
Target:  5'- aGGUGgacgaugcccGGUGAGaCGcCGAUCUCCugGUgCg -3'
miRNA:   3'- -CCAC----------UCGCUC-GC-GCUGGAGGugCGgG- -5'
16386 5' -59.8 NC_004084.1 + 36244 0.67 0.476557
Target:  5'- cGGUGGGCGc-UGCGAucCCUCCGCcaGCUg -3'
miRNA:   3'- -CCACUCGCucGCGCU--GGAGGUG--CGGg -5'
16386 5' -59.8 NC_004084.1 + 42595 0.67 0.466916
Target:  5'- --cGcAGCGGGCGCaGuuCUCUGCGCUCu -3'
miRNA:   3'- ccaC-UCGCUCGCG-CugGAGGUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 16871 0.67 0.466916
Target:  5'- aGUGGGaucuCGAGCGCGGCgUCUGC-UCCg -3'
miRNA:   3'- cCACUC----GCUCGCGCUGgAGGUGcGGG- -5'
16386 5' -59.8 NC_004084.1 + 35756 0.67 0.457377
Target:  5'- gGGUGAGau-GCuCGACCUUCGCGUUa -3'
miRNA:   3'- -CCACUCgcuCGcGCUGGAGGUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 39882 0.67 0.457377
Target:  5'- cGGUGGGCucgaagucgccGAGUugGcCGACCUCguCGCCg -3'
miRNA:   3'- -CCACUCG-----------CUCG--C-GCUGGAGguGCGGg -5'
16386 5' -59.8 NC_004084.1 + 34812 0.67 0.457377
Target:  5'- uGGUccGCGAGCucaucGCGaACCggCgACGCCCg -3'
miRNA:   3'- -CCAcuCGCUCG-----CGC-UGGa-GgUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 9847 0.67 0.447943
Target:  5'- aGGUcGGCGAGgGCGG-CUCaCGCgggaGCCCg -3'
miRNA:   3'- -CCAcUCGCUCgCGCUgGAG-GUG----CGGG- -5'
16386 5' -59.8 NC_004084.1 + 36961 0.67 0.447943
Target:  5'- --aGGGCGAGC-CGGuuCCUCguCACGUCCg -3'
miRNA:   3'- ccaCUCGCUCGcGCU--GGAG--GUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 35197 0.67 0.438617
Target:  5'- --cGAGCGAGCGCGugACCgagagCGCGUaCCa -3'
miRNA:   3'- ccaCUCGCUCGCGC--UGGag---GUGCG-GG- -5'
16386 5' -59.8 NC_004084.1 + 43659 0.67 0.438617
Target:  5'- --cGAaCGGGCG-GGCCUaCCGCGCCg -3'
miRNA:   3'- ccaCUcGCUCGCgCUGGA-GGUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 44361 0.68 0.429404
Target:  5'- cGGUGAcaacgGCGAGCGacACCUCCugaacaccgAUGUCCa -3'
miRNA:   3'- -CCACU-----CGCUCGCgcUGGAGG---------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.