Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 9847 | 0.67 | 0.447943 |
Target: 5'- aGGUcGGCGAGgGCGG-CUCaCGCgggaGCCCg -3' miRNA: 3'- -CCAcUCGCUCgCGCUgGAG-GUG----CGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 36961 | 0.67 | 0.447943 |
Target: 5'- --aGGGCGAGC-CGGuuCCUCguCACGUCCg -3' miRNA: 3'- ccaCUCGCUCGcGCU--GGAG--GUGCGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 35756 | 0.67 | 0.457377 |
Target: 5'- gGGUGAGau-GCuCGACCUUCGCGUUa -3' miRNA: 3'- -CCACUCgcuCGcGCUGGAGGUGCGGg -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 39882 | 0.67 | 0.457377 |
Target: 5'- cGGUGGGCucgaagucgccGAGUugGcCGACCUCguCGCCg -3' miRNA: 3'- -CCACUCG-----------CUCG--C-GCUGGAGguGCGGg -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 34812 | 0.67 | 0.457377 |
Target: 5'- uGGUccGCGAGCucaucGCGaACCggCgACGCCCg -3' miRNA: 3'- -CCAcuCGCUCG-----CGC-UGGa-GgUGCGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 42595 | 0.67 | 0.466916 |
Target: 5'- --cGcAGCGGGCGCaGuuCUCUGCGCUCu -3' miRNA: 3'- ccaC-UCGCUCGCG-CugGAGGUGCGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 16871 | 0.67 | 0.466916 |
Target: 5'- aGUGGGaucuCGAGCGCGGCgUCUGC-UCCg -3' miRNA: 3'- cCACUC----GCUCGCGCUGgAGGUGcGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 36244 | 0.67 | 0.476557 |
Target: 5'- cGGUGGGCGc-UGCGAucCCUCCGCcaGCUg -3' miRNA: 3'- -CCACUCGCucGCGCU--GGAGGUG--CGGg -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 43196 | 0.67 | 0.486297 |
Target: 5'- aGGUGgacgaugcccGGUGAGaCGcCGAUCUCCugGUgCg -3' miRNA: 3'- -CCAC----------UCGCUC-GC-GCUGGAGGugCGgG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 5348 | 0.66 | 0.495141 |
Target: 5'- --cGAGCGGGCGgcgaggacugggaCGAUCUCgACGUCg -3' miRNA: 3'- ccaCUCGCUCGC-------------GCUGGAGgUGCGGg -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 19837 | 0.66 | 0.496129 |
Target: 5'- ---cAGCgGAGgGUGACUUCCGCGUCg -3' miRNA: 3'- ccacUCG-CUCgCGCUGGAGGUGCGGg -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 5087 | 0.66 | 0.50605 |
Target: 5'- cGGUGAGCGgucugcccaGGCGgGccGCCagCugGCCg -3' miRNA: 3'- -CCACUCGC---------UCGCgC--UGGagGugCGGg -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 23821 | 0.66 | 0.50605 |
Target: 5'- cGGUGAGCGucuccaccGuCGCGauggaggcagucGCCgCCAgCGCCCu -3' miRNA: 3'- -CCACUCGCu-------C-GCGC------------UGGaGGU-GCGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 32699 | 0.66 | 0.526139 |
Target: 5'- aGGUG-GCGAGCGacgucgagguaGACugaCUCCAUGUCg -3' miRNA: 3'- -CCACuCGCUCGCg----------CUG---GAGGUGCGGg -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 22992 | 0.66 | 0.526139 |
Target: 5'- --cGGGaucccaccCGAuCGCGACCUCUugGUCCu -3' miRNA: 3'- ccaCUC--------GCUcGCGCUGGAGGugCGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 57024 | 0.66 | 0.536296 |
Target: 5'- -aUGcGGCGAuCGaCGACCUCCugguagacguCGCCCu -3' miRNA: 3'- ccAC-UCGCUcGC-GCUGGAGGu---------GCGGG- -5' |
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16386 | 5' | -59.8 | NC_004084.1 | + | 10390 | 0.66 | 0.546521 |
Target: 5'- aGGcGAuCGAGCGCGAagaaCUCCGCGa-- -3' miRNA: 3'- -CCaCUcGCUCGCGCUg---GAGGUGCggg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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