miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 5' -59.8 NC_004084.1 + 29328 0.68 0.411325
Target:  5'- uGGUucGAGcCGGGCGCGACgaguaCuCGCCCg -3'
miRNA:   3'- -CCA--CUC-GCUCGCGCUGgag--GuGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 29997 0.68 0.402465
Target:  5'- --cGGGCuGGCGCGGgCUCgCACGUUCa -3'
miRNA:   3'- ccaCUCGcUCGCGCUgGAG-GUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 26802 0.68 0.385111
Target:  5'- uGUGGGcCGAGCG-GGCCUCagcggcuaugacUACGCCg -3'
miRNA:   3'- cCACUC-GCUCGCgCUGGAG------------GUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 30600 0.69 0.376622
Target:  5'- gGGUGAGguGGCGCGGgaucuUCUCgACGCCg -3'
miRNA:   3'- -CCACUCgcUCGCGCU-----GGAGgUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 51796 0.69 0.37578
Target:  5'- --cGAGUG-GCG-GuuccugaaguccuACCUCCGCGCCCg -3'
miRNA:   3'- ccaCUCGCuCGCgC-------------UGGAGGUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 40346 0.69 0.360026
Target:  5'- gGGUcGAucagcGCGAGCGUGAaCUCCAUcCCCu -3'
miRNA:   3'- -CCA-CU-----CGCUCGCGCUgGAGGUGcGGG- -5'
16386 5' -59.8 NC_004084.1 + 3428 0.7 0.320812
Target:  5'- cGGUG-GCcGGCGCGcuCCUCCccCGUCCg -3'
miRNA:   3'- -CCACuCGcUCGCGCu-GGAGGu-GCGGG- -5'
16386 5' -59.8 NC_004084.1 + 18267 0.7 0.312626
Target:  5'- uGGUGAuccugugcucGCGAGUGacgugcuCGAUCUCCAuCGUCCa -3'
miRNA:   3'- -CCACU----------CGCUCGC-------GCUGGAGGU-GCGGG- -5'
16386 5' -59.8 NC_004084.1 + 46867 0.7 0.298861
Target:  5'- aGGacAGCGuuuGCGuCGGCUgccgCCACGCCCc -3'
miRNA:   3'- -CCacUCGCu--CGC-GCUGGa---GGUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 47733 0.71 0.278091
Target:  5'- uGG-GGGCGucGC-CGACCUCgACGCCg -3'
miRNA:   3'- -CCaCUCGCu-CGcGCUGGAGgUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 12545 0.71 0.271428
Target:  5'- aGGUGAGCGA-CGaCGACgUCC-CGUUCa -3'
miRNA:   3'- -CCACUCGCUcGC-GCUGgAGGuGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 38436 0.71 0.264894
Target:  5'- --cGAGCGAacGCGCGACgUCgACGUCg -3'
miRNA:   3'- ccaCUCGCU--CGCGCUGgAGgUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 42274 0.71 0.252209
Target:  5'- --cGAGC-AGCGCGACCaCCGCGgucaCCCg -3'
miRNA:   3'- ccaCUCGcUCGCGCUGGaGGUGC----GGG- -5'
16386 5' -59.8 NC_004084.1 + 28821 0.72 0.240028
Target:  5'- uGUGGGCGAGCaucGCGACCgguuCGCCg -3'
miRNA:   3'- cCACUCGCUCG---CGCUGGagguGCGGg -5'
16386 5' -59.8 NC_004084.1 + 29417 0.73 0.186331
Target:  5'- --cGAGUucgaGAGCGCGugggacguCCUCCGCGCCa -3'
miRNA:   3'- ccaCUCG----CUCGCGCu-------GGAGGUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 22613 0.76 0.11594
Target:  5'- uGGUGAGCucaugaccGAGCGCGuCCUUCccgGCGCCUc -3'
miRNA:   3'- -CCACUCG--------CUCGCGCuGGAGG---UGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 8577 1.14 0.000209
Target:  5'- aGGUGAGCGAGCGCGACCUCCACGCCCg -3'
miRNA:   3'- -CCACUCGCUCGCGCUGGAGGUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.