Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 3428 | 0.7 | 0.320812 |
Target: 5'- cGGUG-GCcGGCGCGcuCCUCCccCGUCCg -3' miRNA: 3'- -CCACuCGcUCGCGCu-GGAGGu-GCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 5087 | 0.66 | 0.50605 |
Target: 5'- cGGUGAGCGgucugcccaGGCGgGccGCCagCugGCCg -3' miRNA: 3'- -CCACUCGC---------UCGCgC--UGGagGugCGGg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 5348 | 0.66 | 0.495141 |
Target: 5'- --cGAGCGGGCGgcgaggacugggaCGAUCUCgACGUCg -3' miRNA: 3'- ccaCUCGCUCGC-------------GCUGGAGgUGCGGg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 8577 | 1.14 | 0.000209 |
Target: 5'- aGGUGAGCGAGCGCGACCUCCACGCCCg -3' miRNA: 3'- -CCACUCGCUCGCGCUGGAGGUGCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 9847 | 0.67 | 0.447943 |
Target: 5'- aGGUcGGCGAGgGCGG-CUCaCGCgggaGCCCg -3' miRNA: 3'- -CCAcUCGCUCgCGCUgGAG-GUG----CGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 10390 | 0.66 | 0.546521 |
Target: 5'- aGGcGAuCGAGCGCGAagaaCUCCGCGa-- -3' miRNA: 3'- -CCaCUcGCUCGCGCUg---GAGGUGCggg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 12545 | 0.71 | 0.271428 |
Target: 5'- aGGUGAGCGA-CGaCGACgUCC-CGUUCa -3' miRNA: 3'- -CCACUCGCUcGC-GCUGgAGGuGCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 16871 | 0.67 | 0.466916 |
Target: 5'- aGUGGGaucuCGAGCGCGGCgUCUGC-UCCg -3' miRNA: 3'- cCACUC----GCUCGCGCUGgAGGUGcGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 18267 | 0.7 | 0.312626 |
Target: 5'- uGGUGAuccugugcucGCGAGUGacgugcuCGAUCUCCAuCGUCCa -3' miRNA: 3'- -CCACU----------CGCUCGC-------GCUGGAGGU-GCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 19837 | 0.66 | 0.496129 |
Target: 5'- ---cAGCgGAGgGUGACUUCCGCGUCg -3' miRNA: 3'- ccacUCG-CUCgCGCUGGAGGUGCGGg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 22613 | 0.76 | 0.11594 |
Target: 5'- uGGUGAGCucaugaccGAGCGCGuCCUUCccgGCGCCUc -3' miRNA: 3'- -CCACUCG--------CUCGCGCuGGAGG---UGCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 22992 | 0.66 | 0.526139 |
Target: 5'- --cGGGaucccaccCGAuCGCGACCUCUugGUCCu -3' miRNA: 3'- ccaCUC--------GCUcGCGCUGGAGGugCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 23821 | 0.66 | 0.50605 |
Target: 5'- cGGUGAGCGucuccaccGuCGCGauggaggcagucGCCgCCAgCGCCCu -3' miRNA: 3'- -CCACUCGCu-------C-GCGC------------UGGaGGU-GCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 26802 | 0.68 | 0.385111 |
Target: 5'- uGUGGGcCGAGCG-GGCCUCagcggcuaugacUACGCCg -3' miRNA: 3'- cCACUC-GCUCGCgCUGGAG------------GUGCGGg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 28821 | 0.72 | 0.240028 |
Target: 5'- uGUGGGCGAGCaucGCGACCgguuCGCCg -3' miRNA: 3'- cCACUCGCUCG---CGCUGGagguGCGGg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 29328 | 0.68 | 0.411325 |
Target: 5'- uGGUucGAGcCGGGCGCGACgaguaCuCGCCCg -3' miRNA: 3'- -CCA--CUC-GCUCGCGCUGgag--GuGCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 29417 | 0.73 | 0.186331 |
Target: 5'- --cGAGUucgaGAGCGCGugggacguCCUCCGCGCCa -3' miRNA: 3'- ccaCUCG----CUCGCGCu-------GGAGGUGCGGg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 29997 | 0.68 | 0.402465 |
Target: 5'- --cGGGCuGGCGCGGgCUCgCACGUUCa -3' miRNA: 3'- ccaCUCGcUCGCGCUgGAG-GUGCGGG- -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 30600 | 0.69 | 0.376622 |
Target: 5'- gGGUGAGguGGCGCGGgaucuUCUCgACGCCg -3' miRNA: 3'- -CCACUCgcUCGCGCU-----GGAGgUGCGGg -5' |
|||||||
16386 | 5' | -59.8 | NC_004084.1 | + | 32699 | 0.66 | 0.526139 |
Target: 5'- aGGUG-GCGAGCGacgucgagguaGACugaCUCCAUGUCg -3' miRNA: 3'- -CCACuCGCUCGCg----------CUG---GAGGUGCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home