miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16386 5' -59.8 NC_004084.1 + 34812 0.67 0.457377
Target:  5'- uGGUccGCGAGCucaucGCGaACCggCgACGCCCg -3'
miRNA:   3'- -CCAcuCGCUCG-----CGC-UGGa-GgUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 35197 0.67 0.438617
Target:  5'- --cGAGCGAGCGCGugACCgagagCGCGUaCCa -3'
miRNA:   3'- ccaCUCGCUCGCGC--UGGag---GUGCG-GG- -5'
16386 5' -59.8 NC_004084.1 + 35756 0.67 0.457377
Target:  5'- gGGUGAGau-GCuCGACCUUCGCGUUa -3'
miRNA:   3'- -CCACUCgcuCGcGCUGGAGGUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 36244 0.67 0.476557
Target:  5'- cGGUGGGCGc-UGCGAucCCUCCGCcaGCUg -3'
miRNA:   3'- -CCACUCGCucGCGCU--GGAGGUG--CGGg -5'
16386 5' -59.8 NC_004084.1 + 36961 0.67 0.447943
Target:  5'- --aGGGCGAGC-CGGuuCCUCguCACGUCCg -3'
miRNA:   3'- ccaCUCGCUCGcGCU--GGAG--GUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 38436 0.71 0.264894
Target:  5'- --cGAGCGAacGCGCGACgUCgACGUCg -3'
miRNA:   3'- ccaCUCGCU--CGCGCUGgAGgUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 39882 0.67 0.457377
Target:  5'- cGGUGGGCucgaagucgccGAGUugGcCGACCUCguCGCCg -3'
miRNA:   3'- -CCACUCG-----------CUCG--C-GCUGGAGguGCGGg -5'
16386 5' -59.8 NC_004084.1 + 40346 0.69 0.360026
Target:  5'- gGGUcGAucagcGCGAGCGUGAaCUCCAUcCCCu -3'
miRNA:   3'- -CCA-CU-----CGCUCGCGCUgGAGGUGcGGG- -5'
16386 5' -59.8 NC_004084.1 + 42274 0.71 0.252209
Target:  5'- --cGAGC-AGCGCGACCaCCGCGgucaCCCg -3'
miRNA:   3'- ccaCUCGcUCGCGCUGGaGGUGC----GGG- -5'
16386 5' -59.8 NC_004084.1 + 42595 0.67 0.466916
Target:  5'- --cGcAGCGGGCGCaGuuCUCUGCGCUCu -3'
miRNA:   3'- ccaC-UCGCUCGCG-CugGAGGUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 43196 0.67 0.486297
Target:  5'- aGGUGgacgaugcccGGUGAGaCGcCGAUCUCCugGUgCg -3'
miRNA:   3'- -CCAC----------UCGCUC-GC-GCUGGAGGugCGgG- -5'
16386 5' -59.8 NC_004084.1 + 43659 0.67 0.438617
Target:  5'- --cGAaCGGGCG-GGCCUaCCGCGCCg -3'
miRNA:   3'- ccaCUcGCUCGCgCUGGA-GGUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 44361 0.68 0.429404
Target:  5'- cGGUGAcaacgGCGAGCGacACCUCCugaacaccgAUGUCCa -3'
miRNA:   3'- -CCACU-----CGCUCGCgcUGGAGG---------UGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 46867 0.7 0.298861
Target:  5'- aGGacAGCGuuuGCGuCGGCUgccgCCACGCCCc -3'
miRNA:   3'- -CCacUCGCu--CGC-GCUGGa---GGUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 47733 0.71 0.278091
Target:  5'- uGG-GGGCGucGC-CGACCUCgACGCCg -3'
miRNA:   3'- -CCaCUCGCu-CGcGCUGGAGgUGCGGg -5'
16386 5' -59.8 NC_004084.1 + 51796 0.69 0.37578
Target:  5'- --cGAGUG-GCG-GuuccugaaguccuACCUCCGCGCCCg -3'
miRNA:   3'- ccaCUCGCuCGCgC-------------UGGAGGUGCGGG- -5'
16386 5' -59.8 NC_004084.1 + 57024 0.66 0.536296
Target:  5'- -aUGcGGCGAuCGaCGACCUCCugguagacguCGCCCu -3'
miRNA:   3'- ccAC-UCGCUcGC-GCUGGAGGu---------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.