Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16387 | 3' | -51.9 | NC_004084.1 | + | 52787 | 0.66 | 0.894332 |
Target: 5'- -uUCGAGGACGUCGcucGGGCcGaGGUCCu -3' miRNA: 3'- cuAGCUCUUGUGGC---UCCGaCaUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 10804 | 0.66 | 0.894332 |
Target: 5'- -cUCuGGAGCGCCGAacucguGGUgcuccgcGUAGUCCa -3' miRNA: 3'- cuAGcUCUUGUGGCU------CCGa------CAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 18797 | 0.66 | 0.894332 |
Target: 5'- ---aGGGAACAuCCaGGGCgUGUGGUCg -3' miRNA: 3'- cuagCUCUUGU-GGcUCCG-ACAUCAGg -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 19056 | 0.66 | 0.894332 |
Target: 5'- uGAUCGAGAcCAgCGAGGagucGUAGcucagcUCCg -3' miRNA: 3'- -CUAGCUCUuGUgGCUCCga--CAUC------AGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 44205 | 0.66 | 0.897196 |
Target: 5'- cGGUUGAGGACcucgacgagcggaugGCCGAcGGCUGggagcucGUCUa -3' miRNA: 3'- -CUAGCUCUUG---------------UGGCU-CCGACau-----CAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 33129 | 0.66 | 0.899315 |
Target: 5'- gGAUCGAcguGAGCGCCGAGucagucgaggucgaGCUgcuccugaacgGUGGUCUc -3' miRNA: 3'- -CUAGCU---CUUGUGGCUC--------------CGA-----------CAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 23133 | 0.66 | 0.908211 |
Target: 5'- cGAUCGAGGaccuccccaGCGCCGAGGaCU----UCCc -3' miRNA: 3'- -CUAGCUCU---------UGUGGCUCC-GAcaucAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 6390 | 0.66 | 0.908211 |
Target: 5'- --aCGAGAGCGCCGAGGaccgAGa-- -3' miRNA: 3'- cuaGCUCUUGUGGCUCCgacaUCagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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