Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16387 | 3' | -51.9 | NC_004084.1 | + | 52787 | 0.66 | 0.894332 |
Target: 5'- -uUCGAGGACGUCGcucGGGCcGaGGUCCu -3' miRNA: 3'- cuAGCUCUUGUGGC---UCCGaCaUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 52579 | 0.77 | 0.336307 |
Target: 5'- --aCGAGGACugCGGcGGC-GUGGUCCg -3' miRNA: 3'- cuaGCUCUUGugGCU-CCGaCAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 49578 | 0.73 | 0.52784 |
Target: 5'- gGAUCGAGucGACguACCGGuacaccucagcgcGGUUGUAGUCCu -3' miRNA: 3'- -CUAGCUC--UUG--UGGCU-------------CCGACAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 48921 | 0.66 | 0.879359 |
Target: 5'- --gCGAGAACuuCGAGGCagGUGG-CUa -3' miRNA: 3'- cuaGCUCUUGugGCUCCGa-CAUCaGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 47922 | 0.71 | 0.661724 |
Target: 5'- cGAUCGAGAcgGgACCGGccuGGUUGgcgugAGUCCc -3' miRNA: 3'- -CUAGCUCU--UgUGGCU---CCGACa----UCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 46749 | 0.66 | 0.88698 |
Target: 5'- aAUCGcGGACugUGGcGGaUGUAGUCCu -3' miRNA: 3'- cUAGCuCUUGugGCU-CCgACAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 44205 | 0.66 | 0.897196 |
Target: 5'- cGGUUGAGGACcucgacgagcggaugGCCGAcGGCUGggagcucGUCUa -3' miRNA: 3'- -CUAGCUCUUG---------------UGGCU-CCGACau-----CAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 41611 | 0.74 | 0.445835 |
Target: 5'- cGUCGAGGACGaacgCGAGGCgacGGUCCg -3' miRNA: 3'- cUAGCUCUUGUg---GCUCCGacaUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 40596 | 0.68 | 0.809586 |
Target: 5'- --aCGAGAACAgCGAgcgGGCUG--GUCCc -3' miRNA: 3'- cuaGCUCUUGUgGCU---CCGACauCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 38497 | 0.66 | 0.88698 |
Target: 5'- -cUCGAGuucgcgcuuuAUGCCGAGGCcGUacgguuGGUCCu -3' miRNA: 3'- cuAGCUCu---------UGUGGCUCCGaCA------UCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 35664 | 0.66 | 0.893609 |
Target: 5'- -uUCGAGc-CGCCGAGGCgaacgucguUGUAgagcugcGUCCg -3' miRNA: 3'- cuAGCUCuuGUGGCUCCG---------ACAU-------CAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 33129 | 0.66 | 0.899315 |
Target: 5'- gGAUCGAcguGAGCGCCGAGucagucgaggucgaGCUgcuccugaacgGUGGUCUc -3' miRNA: 3'- -CUAGCU---CUUGUGGCUC--------------CGA-----------CAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 30073 | 0.66 | 0.879359 |
Target: 5'- cGUCGAGGcUGCCGcGGUUGUuGUUCa -3' miRNA: 3'- cUAGCUCUuGUGGCuCCGACAuCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 29696 | 0.7 | 0.694968 |
Target: 5'- cGGUCGcGGACGCUGuccuGGCUG-AGUCg -3' miRNA: 3'- -CUAGCuCUUGUGGCu---CCGACaUCAGg -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 23133 | 0.66 | 0.908211 |
Target: 5'- cGAUCGAGGaccuccccaGCGCCGAGGaCU----UCCc -3' miRNA: 3'- -CUAGCUCU---------UGUGGCUCC-GAcaucAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 22951 | 0.68 | 0.82838 |
Target: 5'- --cCGAGAACACgacacucgcgaCGAGGCcGaccgAGUCCu -3' miRNA: 3'- cuaGCUCUUGUG-----------GCUCCGaCa---UCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 22669 | 0.7 | 0.694968 |
Target: 5'- gGAUCGAGAugGCaGAGGcCUGgGG-CCa -3' miRNA: 3'- -CUAGCUCUugUGgCUCC-GACaUCaGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 22237 | 0.73 | 0.496988 |
Target: 5'- -cUCGAGuGCGCCGAGGCgcucgcgGUcAGUCa -3' miRNA: 3'- cuAGCUCuUGUGGCUCCGa------CA-UCAGg -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 19056 | 0.66 | 0.894332 |
Target: 5'- uGAUCGAGAcCAgCGAGGagucGUAGcucagcUCCg -3' miRNA: 3'- -CUAGCUCUuGUgGCUCCga--CAUC------AGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 18797 | 0.66 | 0.894332 |
Target: 5'- ---aGGGAACAuCCaGGGCgUGUGGUCg -3' miRNA: 3'- cuagCUCUUGU-GGcUCCG-ACAUCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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