Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16387 | 3' | -51.9 | NC_004084.1 | + | 38497 | 0.66 | 0.88698 |
Target: 5'- -cUCGAGuucgcgcuuuAUGCCGAGGCcGUacgguuGGUCCu -3' miRNA: 3'- cuAGCUCu---------UGUGGCUCCGaCA------UCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 35664 | 0.66 | 0.893609 |
Target: 5'- -uUCGAGc-CGCCGAGGCgaacgucguUGUAgagcugcGUCCg -3' miRNA: 3'- cuAGCUCuuGUGGCUCCG---------ACAU-------CAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 3939 | 0.66 | 0.894332 |
Target: 5'- --gCGGGGuuggACACCGAGGUuccgGUGGagCCg -3' miRNA: 3'- cuaGCUCU----UGUGGCUCCGa---CAUCa-GG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 52787 | 0.66 | 0.894332 |
Target: 5'- -uUCGAGGACGUCGcucGGGCcGaGGUCCu -3' miRNA: 3'- cuAGCUCUUGUGGC---UCCGaCaUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 10804 | 0.66 | 0.894332 |
Target: 5'- -cUCuGGAGCGCCGAacucguGGUgcuccgcGUAGUCCa -3' miRNA: 3'- cuAGcUCUUGUGGCU------CCGa------CAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 19056 | 0.66 | 0.894332 |
Target: 5'- uGAUCGAGAcCAgCGAGGagucGUAGcucagcUCCg -3' miRNA: 3'- -CUAGCUCUuGUgGCUCCga--CAUC------AGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 33129 | 0.66 | 0.899315 |
Target: 5'- gGAUCGAcguGAGCGCCGAGucagucgaggucgaGCUgcuccugaacgGUGGUCUc -3' miRNA: 3'- -CUAGCU---CUUGUGGCUC--------------CGA-----------CAUCAGG- -5' |
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16387 | 3' | -51.9 | NC_004084.1 | + | 22237 | 0.73 | 0.496988 |
Target: 5'- -cUCGAGuGCGCCGAGGCgcucgcgGUcAGUCa -3' miRNA: 3'- cuAGCUCuUGUGGCUCCGa------CA-UCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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