miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16387 5' -59.5 NC_004084.1 + 53188 0.66 0.539023
Target:  5'- aCUcGGCGGCuCCG-UCGAGUGCCUCc- -3'
miRNA:   3'- -GAcCCGCUG-GGUgAGCUCGUGGAGcu -5'
16387 5' -59.5 NC_004084.1 + 29057 0.66 0.528742
Target:  5'- gCUGGcaggccGCGaccGCCCGCUCGGGgGCgUCGu -3'
miRNA:   3'- -GACC------CGC---UGGGUGAGCUCgUGgAGCu -5'
16387 5' -59.5 NC_004084.1 + 35625 0.66 0.528742
Target:  5'- --cGGCGGCacucgCCGC-CGAGguCCUCGAu -3'
miRNA:   3'- gacCCGCUG-----GGUGaGCUCguGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 17444 0.66 0.527718
Target:  5'- --cGGCGGaacggauguucucCUCACUCGAGC-CCUCGc -3'
miRNA:   3'- gacCCGCU-------------GGGUGAGCUCGuGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 9065 0.66 0.518534
Target:  5'- -cGGGCGACgUCGa-CGAuCACCUCGAc -3'
miRNA:   3'- gaCCCGCUG-GGUgaGCUcGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 12591 0.66 0.518534
Target:  5'- -----gGAUCCAgCUCGAGCAUCUCGGc -3'
miRNA:   3'- gacccgCUGGGU-GAGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 16093 0.66 0.508406
Target:  5'- -aGGGCGAg--AC-CGAGCGCCUCGc -3'
miRNA:   3'- gaCCCGCUgggUGaGCUCGUGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 7428 0.66 0.498362
Target:  5'- -aGGGCGauGCCgACgguggCGAG-ACCUCGGa -3'
miRNA:   3'- gaCCCGC--UGGgUGa----GCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 56865 0.66 0.488408
Target:  5'- -cGGGCu-CCgGCUCGAcggccGUGCCUCGGu -3'
miRNA:   3'- gaCCCGcuGGgUGAGCU-----CGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 51401 0.67 0.478548
Target:  5'- -cGGGCG---CACUCGAuCGCCUCGGu -3'
miRNA:   3'- gaCCCGCuggGUGAGCUcGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 20059 0.67 0.468787
Target:  5'- gCUGGGuCGGCCCcugcggcCUCGAGgAUCgCGAg -3'
miRNA:   3'- -GACCC-GCUGGGu------GAGCUCgUGGaGCU- -5'
16387 5' -59.5 NC_004084.1 + 42346 0.67 0.468787
Target:  5'- -cGaGGCGGCggaACUCGAGCGCCaggcCGAg -3'
miRNA:   3'- gaC-CCGCUGgg-UGAGCUCGUGGa---GCU- -5'
16387 5' -59.5 NC_004084.1 + 5348 0.67 0.459129
Target:  5'- uCUGGGaucgauaGGCCCucCUCGuguGCGCCgCGAa -3'
miRNA:   3'- -GACCCg------CUGGGu-GAGCu--CGUGGaGCU- -5'
16387 5' -59.5 NC_004084.1 + 51325 0.67 0.459129
Target:  5'- -cGGucgcaGCGAUCCggACgUCGAGCugCUCGAc -3'
miRNA:   3'- gaCC-----CGCUGGG--UG-AGCUCGugGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 51241 0.67 0.440137
Target:  5'- gCUcGGCGACCguCUCGAuCGCCUCc- -3'
miRNA:   3'- -GAcCCGCUGGguGAGCUcGUGGAGcu -5'
16387 5' -59.5 NC_004084.1 + 52682 0.67 0.43081
Target:  5'- -cGaGGCGAucauCCCGaUCGAGgACCUCGGc -3'
miRNA:   3'- gaC-CCGCU----GGGUgAGCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 18715 0.67 0.43081
Target:  5'- gCUGGGUGAacaccucaCCAgaCGAGauCGCCUCGGa -3'
miRNA:   3'- -GACCCGCUg-------GGUgaGCUC--GUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 9856 0.67 0.43081
Target:  5'- -aGGGCGGCUCACgCGGGaGCC-CGGc -3'
miRNA:   3'- gaCCCGCUGGGUGaGCUCgUGGaGCU- -5'
16387 5' -59.5 NC_004084.1 + 42968 0.68 0.421601
Target:  5'- --cGGUGAacaaCGCgaUCGAGCGCCUCGAu -3'
miRNA:   3'- gacCCGCUgg--GUG--AGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 17659 0.68 0.41251
Target:  5'- cCUGGGCGACaCC---CGAGCACagggCGAc -3'
miRNA:   3'- -GACCCGCUG-GGugaGCUCGUGga--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.