miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16387 5' -59.5 NC_004084.1 + 42968 0.68 0.421601
Target:  5'- --cGGUGAacaaCGCgaUCGAGCGCCUCGAu -3'
miRNA:   3'- gacCCGCUgg--GUG--AGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 17659 0.68 0.41251
Target:  5'- cCUGGGCGACaCC---CGAGCACagggCGAc -3'
miRNA:   3'- -GACCCGCUG-GGugaGCUCGUGga--GCU- -5'
16387 5' -59.5 NC_004084.1 + 43663 0.68 0.385981
Target:  5'- -cGGGCgGGCCUACcgcgcCGAGUGCCUgCGAc -3'
miRNA:   3'- gaCCCG-CUGGGUGa----GCUCGUGGA-GCU- -5'
16387 5' -59.5 NC_004084.1 + 3744 0.69 0.360603
Target:  5'- gUGGGCGugCCAUcggucugggUGAGgAUCUCGAu -3'
miRNA:   3'- gACCCGCugGGUGa--------GCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 10357 0.69 0.352406
Target:  5'- --cGGUGAgcaacuCCCGCUCGAGUGgCUCGAu -3'
miRNA:   3'- gacCCGCU------GGGUGAGCUCGUgGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 51207 0.69 0.359778
Target:  5'- gCUGGcGCGGgCUACugggcguggugcgUCGAGCAgCUCGAc -3'
miRNA:   3'- -GACC-CGCUgGGUG-------------AGCUCGUgGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 36181 0.69 0.344342
Target:  5'- -gGGGcCGugCCACUCGuaggagacGGCgACCUCGu -3'
miRNA:   3'- gaCCC-GCugGGUGAGC--------UCG-UGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 42359 0.71 0.251057
Target:  5'- -cGGGUGACCgcgguggucgcgcUGCUCGAGCAUcaCUCGAc -3'
miRNA:   3'- gaCCCGCUGG-------------GUGAGCUCGUG--GAGCU- -5'
16387 5' -59.5 NC_004084.1 + 28307 0.71 0.258017
Target:  5'- -gGGGCGGCgaguagUGAGCACCUCGAg -3'
miRNA:   3'- gaCCCGCUGgguga-GCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 5549 0.72 0.210878
Target:  5'- --aGGCGACCC-CUCG-GCACCgcUCGAg -3'
miRNA:   3'- gacCCGCUGGGuGAGCuCGUGG--AGCU- -5'
16387 5' -59.5 NC_004084.1 + 53399 0.72 0.2394
Target:  5'- -cGGGCGGCuaCCAacucCUCGAGgACCUCGu -3'
miRNA:   3'- gaCCCGCUG--GGU----GAGCUCgUGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 22136 0.72 0.227622
Target:  5'- gCUGGGaagcgauGACUgACcgCGAGCGCCUCGGc -3'
miRNA:   3'- -GACCCg------CUGGgUGa-GCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 10913 0.74 0.1759
Target:  5'- -gGaGGCGcugCCACUCGAGgGCCUCGAg -3'
miRNA:   3'- gaC-CCGCug-GGUGAGCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 25197 0.76 0.127834
Target:  5'- -gGGGaCGGCCCGCUCGGcCGCCUCu- -3'
miRNA:   3'- gaCCC-GCUGGGUGAGCUcGUGGAGcu -5'
16387 5' -59.5 NC_004084.1 + 30856 0.79 0.072647
Target:  5'- gUGGGCGGCCCGCUCgucacguucgauggcGAGCuuCUCGAc -3'
miRNA:   3'- gACCCGCUGGGUGAG---------------CUCGugGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 53512 0.85 0.02527
Target:  5'- -cGGcGgGACCCACUCGGGCAUCUCGAc -3'
miRNA:   3'- gaCC-CgCUGGGUGAGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 8671 1.08 0.000503
Target:  5'- uCUGGGCGACCCACUCGAGCACCUCGAa -3'
miRNA:   3'- -GACCCGCUGGGUGAGCUCGUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.