miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16387 5' -59.5 NC_004084.1 + 3744 0.69 0.360603
Target:  5'- gUGGGCGugCCAUcggucugggUGAGgAUCUCGAu -3'
miRNA:   3'- gACCCGCugGGUGa--------GCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 5348 0.67 0.459129
Target:  5'- uCUGGGaucgauaGGCCCucCUCGuguGCGCCgCGAa -3'
miRNA:   3'- -GACCCg------CUGGGu-GAGCu--CGUGGaGCU- -5'
16387 5' -59.5 NC_004084.1 + 5549 0.72 0.210878
Target:  5'- --aGGCGACCC-CUCG-GCACCgcUCGAg -3'
miRNA:   3'- gacCCGCUGGGuGAGCuCGUGG--AGCU- -5'
16387 5' -59.5 NC_004084.1 + 7428 0.66 0.498362
Target:  5'- -aGGGCGauGCCgACgguggCGAG-ACCUCGGa -3'
miRNA:   3'- gaCCCGC--UGGgUGa----GCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 8671 1.08 0.000503
Target:  5'- uCUGGGCGACCCACUCGAGCACCUCGAa -3'
miRNA:   3'- -GACCCGCUGGGUGAGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 9065 0.66 0.518534
Target:  5'- -cGGGCGACgUCGa-CGAuCACCUCGAc -3'
miRNA:   3'- gaCCCGCUG-GGUgaGCUcGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 9856 0.67 0.43081
Target:  5'- -aGGGCGGCUCACgCGGGaGCC-CGGc -3'
miRNA:   3'- gaCCCGCUGGGUGaGCUCgUGGaGCU- -5'
16387 5' -59.5 NC_004084.1 + 10357 0.69 0.352406
Target:  5'- --cGGUGAgcaacuCCCGCUCGAGUGgCUCGAu -3'
miRNA:   3'- gacCCGCU------GGGUGAGCUCGUgGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 10913 0.74 0.1759
Target:  5'- -gGaGGCGcugCCACUCGAGgGCCUCGAg -3'
miRNA:   3'- gaC-CCGCug-GGUGAGCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 12591 0.66 0.518534
Target:  5'- -----gGAUCCAgCUCGAGCAUCUCGGc -3'
miRNA:   3'- gacccgCUGGGU-GAGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 16093 0.66 0.508406
Target:  5'- -aGGGCGAg--AC-CGAGCGCCUCGc -3'
miRNA:   3'- gaCCCGCUgggUGaGCUCGUGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 17444 0.66 0.527718
Target:  5'- --cGGCGGaacggauguucucCUCACUCGAGC-CCUCGc -3'
miRNA:   3'- gacCCGCU-------------GGGUGAGCUCGuGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 17659 0.68 0.41251
Target:  5'- cCUGGGCGACaCC---CGAGCACagggCGAc -3'
miRNA:   3'- -GACCCGCUG-GGugaGCUCGUGga--GCU- -5'
16387 5' -59.5 NC_004084.1 + 18715 0.67 0.43081
Target:  5'- gCUGGGUGAacaccucaCCAgaCGAGauCGCCUCGGa -3'
miRNA:   3'- -GACCCGCUg-------GGUgaGCUC--GUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 20059 0.67 0.468787
Target:  5'- gCUGGGuCGGCCCcugcggcCUCGAGgAUCgCGAg -3'
miRNA:   3'- -GACCC-GCUGGGu------GAGCUCgUGGaGCU- -5'
16387 5' -59.5 NC_004084.1 + 22136 0.72 0.227622
Target:  5'- gCUGGGaagcgauGACUgACcgCGAGCGCCUCGGc -3'
miRNA:   3'- -GACCCg------CUGGgUGa-GCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 25197 0.76 0.127834
Target:  5'- -gGGGaCGGCCCGCUCGGcCGCCUCu- -3'
miRNA:   3'- gaCCC-GCUGGGUGAGCUcGUGGAGcu -5'
16387 5' -59.5 NC_004084.1 + 28307 0.71 0.258017
Target:  5'- -gGGGCGGCgaguagUGAGCACCUCGAg -3'
miRNA:   3'- gaCCCGCUGgguga-GCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 29057 0.66 0.528742
Target:  5'- gCUGGcaggccGCGaccGCCCGCUCGGGgGCgUCGu -3'
miRNA:   3'- -GACC------CGC---UGGGUGAGCUCgUGgAGCu -5'
16387 5' -59.5 NC_004084.1 + 30856 0.79 0.072647
Target:  5'- gUGGGCGGCCCGCUCgucacguucgauggcGAGCuuCUCGAc -3'
miRNA:   3'- gACCCGCUGGGUGAG---------------CUCGugGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.