miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16387 5' -59.5 NC_004084.1 + 35625 0.66 0.528742
Target:  5'- --cGGCGGCacucgCCGC-CGAGguCCUCGAu -3'
miRNA:   3'- gacCCGCUG-----GGUGaGCUCguGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 36181 0.69 0.344342
Target:  5'- -gGGGcCGugCCACUCGuaggagacGGCgACCUCGu -3'
miRNA:   3'- gaCCC-GCugGGUGAGC--------UCG-UGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 42346 0.67 0.468787
Target:  5'- -cGaGGCGGCggaACUCGAGCGCCaggcCGAg -3'
miRNA:   3'- gaC-CCGCUGgg-UGAGCUCGUGGa---GCU- -5'
16387 5' -59.5 NC_004084.1 + 42359 0.71 0.251057
Target:  5'- -cGGGUGACCgcgguggucgcgcUGCUCGAGCAUcaCUCGAc -3'
miRNA:   3'- gaCCCGCUGG-------------GUGAGCUCGUG--GAGCU- -5'
16387 5' -59.5 NC_004084.1 + 42968 0.68 0.421601
Target:  5'- --cGGUGAacaaCGCgaUCGAGCGCCUCGAu -3'
miRNA:   3'- gacCCGCUgg--GUG--AGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 43663 0.68 0.385981
Target:  5'- -cGGGCgGGCCUACcgcgcCGAGUGCCUgCGAc -3'
miRNA:   3'- gaCCCG-CUGGGUGa----GCUCGUGGA-GCU- -5'
16387 5' -59.5 NC_004084.1 + 51207 0.69 0.359778
Target:  5'- gCUGGcGCGGgCUACugggcguggugcgUCGAGCAgCUCGAc -3'
miRNA:   3'- -GACC-CGCUgGGUG-------------AGCUCGUgGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 51241 0.67 0.440137
Target:  5'- gCUcGGCGACCguCUCGAuCGCCUCc- -3'
miRNA:   3'- -GAcCCGCUGGguGAGCUcGUGGAGcu -5'
16387 5' -59.5 NC_004084.1 + 51325 0.67 0.459129
Target:  5'- -cGGucgcaGCGAUCCggACgUCGAGCugCUCGAc -3'
miRNA:   3'- gaCC-----CGCUGGG--UG-AGCUCGugGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 51401 0.67 0.478548
Target:  5'- -cGGGCG---CACUCGAuCGCCUCGGu -3'
miRNA:   3'- gaCCCGCuggGUGAGCUcGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 52682 0.67 0.43081
Target:  5'- -cGaGGCGAucauCCCGaUCGAGgACCUCGGc -3'
miRNA:   3'- gaC-CCGCU----GGGUgAGCUCgUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 52798 0.68 0.377392
Target:  5'- gCUGGGUugaguucgagGACgUCGCUCGGGCcgagguCCUCGAu -3'
miRNA:   3'- -GACCCG----------CUG-GGUGAGCUCGu-----GGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 53188 0.66 0.539023
Target:  5'- aCUcGGCGGCuCCG-UCGAGUGCCUCc- -3'
miRNA:   3'- -GAcCCGCUG-GGUgAGCUCGUGGAGcu -5'
16387 5' -59.5 NC_004084.1 + 53399 0.72 0.2394
Target:  5'- -cGGGCGGCuaCCAacucCUCGAGgACCUCGu -3'
miRNA:   3'- gaCCCGCUG--GGU----GAGCUCgUGGAGCu -5'
16387 5' -59.5 NC_004084.1 + 53512 0.85 0.02527
Target:  5'- -cGGcGgGACCCACUCGGGCAUCUCGAc -3'
miRNA:   3'- gaCC-CgCUGGGUGAGCUCGUGGAGCU- -5'
16387 5' -59.5 NC_004084.1 + 54079 0.68 0.377392
Target:  5'- -cGGGCGAgCCGaccCUCGAGUACuaCUCGc -3'
miRNA:   3'- gaCCCGCUgGGU---GAGCUCGUG--GAGCu -5'
16387 5' -59.5 NC_004084.1 + 56865 0.66 0.488408
Target:  5'- -cGGGCu-CCgGCUCGAcggccGUGCCUCGGu -3'
miRNA:   3'- gaCCCGcuGGgUGAGCU-----CGUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.