Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 56865 | 0.66 | 0.488408 |
Target: 5'- -cGGGCu-CCgGCUCGAcggccGUGCCUCGGu -3' miRNA: 3'- gaCCCGcuGGgUGAGCU-----CGUGGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 54079 | 0.68 | 0.377392 |
Target: 5'- -cGGGCGAgCCGaccCUCGAGUACuaCUCGc -3' miRNA: 3'- gaCCCGCUgGGU---GAGCUCGUG--GAGCu -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 53512 | 0.85 | 0.02527 |
Target: 5'- -cGGcGgGACCCACUCGGGCAUCUCGAc -3' miRNA: 3'- gaCC-CgCUGGGUGAGCUCGUGGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 53399 | 0.72 | 0.2394 |
Target: 5'- -cGGGCGGCuaCCAacucCUCGAGgACCUCGu -3' miRNA: 3'- gaCCCGCUG--GGU----GAGCUCgUGGAGCu -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 53188 | 0.66 | 0.539023 |
Target: 5'- aCUcGGCGGCuCCG-UCGAGUGCCUCc- -3' miRNA: 3'- -GAcCCGCUG-GGUgAGCUCGUGGAGcu -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 52798 | 0.68 | 0.377392 |
Target: 5'- gCUGGGUugaguucgagGACgUCGCUCGGGCcgagguCCUCGAu -3' miRNA: 3'- -GACCCG----------CUG-GGUGAGCUCGu-----GGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 52682 | 0.67 | 0.43081 |
Target: 5'- -cGaGGCGAucauCCCGaUCGAGgACCUCGGc -3' miRNA: 3'- gaC-CCGCU----GGGUgAGCUCgUGGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 51401 | 0.67 | 0.478548 |
Target: 5'- -cGGGCG---CACUCGAuCGCCUCGGu -3' miRNA: 3'- gaCCCGCuggGUGAGCUcGUGGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 51325 | 0.67 | 0.459129 |
Target: 5'- -cGGucgcaGCGAUCCggACgUCGAGCugCUCGAc -3' miRNA: 3'- gaCC-----CGCUGGG--UG-AGCUCGugGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 51241 | 0.67 | 0.440137 |
Target: 5'- gCUcGGCGACCguCUCGAuCGCCUCc- -3' miRNA: 3'- -GAcCCGCUGGguGAGCUcGUGGAGcu -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 51207 | 0.69 | 0.359778 |
Target: 5'- gCUGGcGCGGgCUACugggcguggugcgUCGAGCAgCUCGAc -3' miRNA: 3'- -GACC-CGCUgGGUG-------------AGCUCGUgGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 43663 | 0.68 | 0.385981 |
Target: 5'- -cGGGCgGGCCUACcgcgcCGAGUGCCUgCGAc -3' miRNA: 3'- gaCCCG-CUGGGUGa----GCUCGUGGA-GCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 42968 | 0.68 | 0.421601 |
Target: 5'- --cGGUGAacaaCGCgaUCGAGCGCCUCGAu -3' miRNA: 3'- gacCCGCUgg--GUG--AGCUCGUGGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 42359 | 0.71 | 0.251057 |
Target: 5'- -cGGGUGACCgcgguggucgcgcUGCUCGAGCAUcaCUCGAc -3' miRNA: 3'- gaCCCGCUGG-------------GUGAGCUCGUG--GAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 42346 | 0.67 | 0.468787 |
Target: 5'- -cGaGGCGGCggaACUCGAGCGCCaggcCGAg -3' miRNA: 3'- gaC-CCGCUGgg-UGAGCUCGUGGa---GCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 36181 | 0.69 | 0.344342 |
Target: 5'- -gGGGcCGugCCACUCGuaggagacGGCgACCUCGu -3' miRNA: 3'- gaCCC-GCugGGUGAGC--------UCG-UGGAGCu -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 35625 | 0.66 | 0.528742 |
Target: 5'- --cGGCGGCacucgCCGC-CGAGguCCUCGAu -3' miRNA: 3'- gacCCGCUG-----GGUGaGCUCguGGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 30856 | 0.79 | 0.072647 |
Target: 5'- gUGGGCGGCCCGCUCgucacguucgauggcGAGCuuCUCGAc -3' miRNA: 3'- gACCCGCUGGGUGAG---------------CUCGugGAGCU- -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 29057 | 0.66 | 0.528742 |
Target: 5'- gCUGGcaggccGCGaccGCCCGCUCGGGgGCgUCGu -3' miRNA: 3'- -GACC------CGC---UGGGUGAGCUCgUGgAGCu -5' |
|||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 28307 | 0.71 | 0.258017 |
Target: 5'- -gGGGCGGCgaguagUGAGCACCUCGAg -3' miRNA: 3'- gaCCCGCUGgguga-GCUCGUGGAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home