Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 9065 | 0.66 | 0.518534 |
Target: 5'- -cGGGCGACgUCGa-CGAuCACCUCGAc -3' miRNA: 3'- gaCCCGCUG-GGUgaGCUcGUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 42968 | 0.68 | 0.421601 |
Target: 5'- --cGGUGAacaaCGCgaUCGAGCGCCUCGAu -3' miRNA: 3'- gacCCGCUgg--GUG--AGCUCGUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 9856 | 0.67 | 0.43081 |
Target: 5'- -aGGGCGGCUCACgCGGGaGCC-CGGc -3' miRNA: 3'- gaCCCGCUGGGUGaGCUCgUGGaGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 18715 | 0.67 | 0.43081 |
Target: 5'- gCUGGGUGAacaccucaCCAgaCGAGauCGCCUCGGa -3' miRNA: 3'- -GACCCGCUg-------GGUgaGCUC--GUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 52682 | 0.67 | 0.43081 |
Target: 5'- -cGaGGCGAucauCCCGaUCGAGgACCUCGGc -3' miRNA: 3'- gaC-CCGCU----GGGUgAGCUCgUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 42346 | 0.67 | 0.468787 |
Target: 5'- -cGaGGCGGCggaACUCGAGCGCCaggcCGAg -3' miRNA: 3'- gaC-CCGCUGgg-UGAGCUCGUGGa---GCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 56865 | 0.66 | 0.488408 |
Target: 5'- -cGGGCu-CCgGCUCGAcggccGUGCCUCGGu -3' miRNA: 3'- gaCCCGcuGGgUGAGCU-----CGUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 7428 | 0.66 | 0.498362 |
Target: 5'- -aGGGCGauGCCgACgguggCGAG-ACCUCGGa -3' miRNA: 3'- gaCCCGC--UGGgUGa----GCUCgUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 16093 | 0.66 | 0.508406 |
Target: 5'- -aGGGCGAg--AC-CGAGCGCCUCGc -3' miRNA: 3'- gaCCCGCUgggUGaGCUCGUGGAGCu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 17659 | 0.68 | 0.41251 |
Target: 5'- cCUGGGCGACaCC---CGAGCACagggCGAc -3' miRNA: 3'- -GACCCGCUG-GGugaGCUCGUGga--GCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 43663 | 0.68 | 0.385981 |
Target: 5'- -cGGGCgGGCCUACcgcgcCGAGUGCCUgCGAc -3' miRNA: 3'- gaCCCG-CUGGGUGa----GCUCGUGGA-GCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 54079 | 0.68 | 0.377392 |
Target: 5'- -cGGGCGAgCCGaccCUCGAGUACuaCUCGc -3' miRNA: 3'- gaCCCGCUgGGU---GAGCUCGUG--GAGCu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 30856 | 0.79 | 0.072647 |
Target: 5'- gUGGGCGGCCCGCUCgucacguucgauggcGAGCuuCUCGAc -3' miRNA: 3'- gACCCGCUGGGUGAG---------------CUCGugGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 25197 | 0.76 | 0.127834 |
Target: 5'- -gGGGaCGGCCCGCUCGGcCGCCUCu- -3' miRNA: 3'- gaCCC-GCUGGGUGAGCUcGUGGAGcu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 10913 | 0.74 | 0.1759 |
Target: 5'- -gGaGGCGcugCCACUCGAGgGCCUCGAg -3' miRNA: 3'- gaC-CCGCug-GGUGAGCUCgUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 5549 | 0.72 | 0.210878 |
Target: 5'- --aGGCGACCC-CUCG-GCACCgcUCGAg -3' miRNA: 3'- gacCCGCUGGGuGAGCuCGUGG--AGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 22136 | 0.72 | 0.227622 |
Target: 5'- gCUGGGaagcgauGACUgACcgCGAGCGCCUCGGc -3' miRNA: 3'- -GACCCg------CUGGgUGa-GCUCGUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 53399 | 0.72 | 0.2394 |
Target: 5'- -cGGGCGGCuaCCAacucCUCGAGgACCUCGu -3' miRNA: 3'- gaCCCGCUG--GGU----GAGCUCgUGGAGCu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 28307 | 0.71 | 0.258017 |
Target: 5'- -gGGGCGGCgaguagUGAGCACCUCGAg -3' miRNA: 3'- gaCCCGCUGgguga-GCUCGUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 51207 | 0.69 | 0.359778 |
Target: 5'- gCUGGcGCGGgCUACugggcguggugcgUCGAGCAgCUCGAc -3' miRNA: 3'- -GACC-CGCUgGGUG-------------AGCUCGUgGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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