Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16387 | 5' | -59.5 | NC_004084.1 | + | 51207 | 0.69 | 0.359778 |
Target: 5'- gCUGGcGCGGgCUACugggcguggugcgUCGAGCAgCUCGAc -3' miRNA: 3'- -GACC-CGCUgGGUG-------------AGCUCGUgGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 54079 | 0.68 | 0.377392 |
Target: 5'- -cGGGCGAgCCGaccCUCGAGUACuaCUCGc -3' miRNA: 3'- gaCCCGCUgGGU---GAGCUCGUG--GAGCu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 51241 | 0.67 | 0.440137 |
Target: 5'- gCUcGGCGACCguCUCGAuCGCCUCc- -3' miRNA: 3'- -GAcCCGCUGGguGAGCUcGUGGAGcu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 52798 | 0.68 | 0.377392 |
Target: 5'- gCUGGGUugaguucgagGACgUCGCUCGGGCcgagguCCUCGAu -3' miRNA: 3'- -GACCCG----------CUG-GGUGAGCUCGu-----GGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 3744 | 0.69 | 0.360603 |
Target: 5'- gUGGGCGugCCAUcggucugggUGAGgAUCUCGAu -3' miRNA: 3'- gACCCGCugGGUGa--------GCUCgUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 10357 | 0.69 | 0.352406 |
Target: 5'- --cGGUGAgcaacuCCCGCUCGAGUGgCUCGAu -3' miRNA: 3'- gacCCGCU------GGGUGAGCUCGUgGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 36181 | 0.69 | 0.344342 |
Target: 5'- -gGGGcCGugCCACUCGuaggagacGGCgACCUCGu -3' miRNA: 3'- gaCCC-GCugGGUGAGC--------UCG-UGGAGCu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 42359 | 0.71 | 0.251057 |
Target: 5'- -cGGGUGACCgcgguggucgcgcUGCUCGAGCAUcaCUCGAc -3' miRNA: 3'- gaCCCGCUGG-------------GUGAGCUCGUG--GAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 5348 | 0.67 | 0.459129 |
Target: 5'- uCUGGGaucgauaGGCCCucCUCGuguGCGCCgCGAa -3' miRNA: 3'- -GACCCg------CUGGGu-GAGCu--CGUGGaGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 51325 | 0.67 | 0.459129 |
Target: 5'- -cGGucgcaGCGAUCCggACgUCGAGCugCUCGAc -3' miRNA: 3'- gaCC-----CGCUGGG--UG-AGCUCGugGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 20059 | 0.67 | 0.468787 |
Target: 5'- gCUGGGuCGGCCCcugcggcCUCGAGgAUCgCGAg -3' miRNA: 3'- -GACCC-GCUGGGu------GAGCUCgUGGaGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 51401 | 0.67 | 0.478548 |
Target: 5'- -cGGGCG---CACUCGAuCGCCUCGGu -3' miRNA: 3'- gaCCCGCuggGUGAGCUcGUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 12591 | 0.66 | 0.518534 |
Target: 5'- -----gGAUCCAgCUCGAGCAUCUCGGc -3' miRNA: 3'- gacccgCUGGGU-GAGCUCGUGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 17444 | 0.66 | 0.527718 |
Target: 5'- --cGGCGGaacggauguucucCUCACUCGAGC-CCUCGc -3' miRNA: 3'- gacCCGCU-------------GGGUGAGCUCGuGGAGCu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 35625 | 0.66 | 0.528742 |
Target: 5'- --cGGCGGCacucgCCGC-CGAGguCCUCGAu -3' miRNA: 3'- gacCCGCUG-----GGUGaGCUCguGGAGCU- -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 53188 | 0.66 | 0.539023 |
Target: 5'- aCUcGGCGGCuCCG-UCGAGUGCCUCc- -3' miRNA: 3'- -GAcCCGCUG-GGUgAGCUCGUGGAGcu -5' |
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16387 | 5' | -59.5 | NC_004084.1 | + | 53512 | 0.85 | 0.02527 |
Target: 5'- -cGGcGgGACCCACUCGGGCAUCUCGAc -3' miRNA: 3'- gaCC-CgCUGGGUGAGCUCGUGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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