miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16388 3' -54.9 NC_004084.1 + 23933 0.67 0.693324
Target:  5'- cGCgaUGGACGCGgUaaguaGUCCGACACCGcGa -3'
miRNA:   3'- cCG--ACUUGCGUgG-----UAGGCUGUGGCuC- -5'
16388 3' -54.9 NC_004084.1 + 29714 0.67 0.682548
Target:  5'- uGGCUGAGuCGCGUCGUCUGGCcguCCGc- -3'
miRNA:   3'- -CCGACUU-GCGUGGUAGGCUGu--GGCuc -5'
16388 3' -54.9 NC_004084.1 + 833 0.67 0.682548
Target:  5'- cGGcCUGGugGUccagcGCC-UCCGACGUCGAGa -3'
miRNA:   3'- -CC-GACUugCG-----UGGuAGGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 26353 0.67 0.682548
Target:  5'- cGC-GAGCgGCACCAUCUGGgACaCGGGc -3'
miRNA:   3'- cCGaCUUG-CGUGGUAGGCUgUG-GCUC- -5'
16388 3' -54.9 NC_004084.1 + 50092 0.68 0.660865
Target:  5'- cGGCUGGAU-CAuCCGcgCCGACGCCGu- -3'
miRNA:   3'- -CCGACUUGcGU-GGUa-GGCUGUGGCuc -5'
16388 3' -54.9 NC_004084.1 + 52034 0.68 0.660865
Target:  5'- aGGCUGAGCGaGCgGUCuaCGGCGUCGGGa -3'
miRNA:   3'- -CCGACUUGCgUGgUAG--GCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 35652 0.68 0.649979
Target:  5'- aGGC-GAACgucguuguagaGCugCGUCCGGCggcacucgccGCCGAGg -3'
miRNA:   3'- -CCGaCUUG-----------CGugGUAGGCUG----------UGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 28943 0.68 0.639077
Target:  5'- uGCgGAACGC-CCAcccguucgaggUUCGugACCGAGa -3'
miRNA:   3'- cCGaCUUGCGuGGU-----------AGGCugUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 52716 0.68 0.628169
Target:  5'- aGCcGAG-GCACUcacccugguAUCCGACGCCGGGc -3'
miRNA:   3'- cCGaCUUgCGUGG---------UAGGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 18744 0.68 0.628169
Target:  5'- uGGCguaGGugGCACCuUCCGACucgUCGAu -3'
miRNA:   3'- -CCGa--CUugCGUGGuAGGCUGu--GGCUc -5'
16388 3' -54.9 NC_004084.1 + 43779 0.68 0.628169
Target:  5'- -aCUGGGCGCucGCCggcggagaGUCCGGCGgCGAGg -3'
miRNA:   3'- ccGACUUGCG--UGG--------UAGGCUGUgGCUC- -5'
16388 3' -54.9 NC_004084.1 + 55918 0.69 0.605284
Target:  5'- gGGCUGGaucgggaAUGCgAUCGUCgCGAaCACCGGGg -3'
miRNA:   3'- -CCGACU-------UGCG-UGGUAG-GCU-GUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 37018 0.7 0.526996
Target:  5'- aGCUGGACGUcgACCGgaucaugcccgagCUGGCACCGAc -3'
miRNA:   3'- cCGACUUGCG--UGGUa------------GGCUGUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 15757 0.7 0.519665
Target:  5'- cGGCUgcGAGCGCcacguucuCCAUuuccucuucagucUCGACGCCGAGa -3'
miRNA:   3'- -CCGA--CUUGCGu-------GGUA-------------GGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 25561 0.71 0.479617
Target:  5'- cGGC---GCGCACCuUCUGACGCCGc- -3'
miRNA:   3'- -CCGacuUGCGUGGuAGGCUGUGGCuc -5'
16388 3' -54.9 NC_004084.1 + 29017 0.71 0.46959
Target:  5'- cGCUGucGACGCGCUccCCGAgGCCGAc -3'
miRNA:   3'- cCGAC--UUGCGUGGuaGGCUgUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 10860 0.71 0.468594
Target:  5'- uGCUGAcuugcguACGCACCcgCUGGC-CCGAa -3'
miRNA:   3'- cCGACU-------UGCGUGGuaGGCUGuGGCUc -5'
16388 3' -54.9 NC_004084.1 + 55707 0.73 0.375865
Target:  5'- uGGCacucGAGCGUguACCAgacgCCGAgGCCGAGa -3'
miRNA:   3'- -CCGa---CUUGCG--UGGUa---GGCUgUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 4320 0.75 0.292696
Target:  5'- gGGCgucgucgaguccgGAGCGUucuCCA-CCGACGCCGAGg -3'
miRNA:   3'- -CCGa------------CUUGCGu--GGUaGGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 32028 0.79 0.171384
Target:  5'- uGGUUGAGCGCGCCGg-CGACGuuGAGu -3'
miRNA:   3'- -CCGACUUGCGUGGUagGCUGUggCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.