miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16388 3' -54.9 NC_004084.1 + 56488 0.66 0.776514
Target:  5'- uGCUGAACGgAUCGggagCCGAgCGucuCCGAGa -3'
miRNA:   3'- cCGACUUGCgUGGUa---GGCU-GU---GGCUC- -5'
16388 3' -54.9 NC_004084.1 + 55918 0.69 0.605284
Target:  5'- gGGCUGGaucgggaAUGCgAUCGUCgCGAaCACCGGGg -3'
miRNA:   3'- -CCGACU-------UGCG-UGGUAG-GCU-GUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 55707 0.73 0.375865
Target:  5'- uGGCacucGAGCGUguACCAgacgCCGAgGCCGAGa -3'
miRNA:   3'- -CCGa---CUUGCG--UGGUa---GGCUgUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 55427 0.66 0.776514
Target:  5'- uGCUGuuugGCGCgAUCuCGAUACUGAGa -3'
miRNA:   3'- cCGACuug-CGUGgUAG-GCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 54528 0.66 0.766513
Target:  5'- cGGCaccUGGACgGCgagAUCGUCCGGCgcuguaucACCGAGg -3'
miRNA:   3'- -CCG---ACUUG-CG---UGGUAGGCUG--------UGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 53128 0.66 0.756375
Target:  5'- aGUgGAugGCggACCAUCCG-CugCGGGa -3'
miRNA:   3'- cCGaCUugCG--UGGUAGGCuGugGCUC- -5'
16388 3' -54.9 NC_004084.1 + 52716 0.68 0.628169
Target:  5'- aGCcGAG-GCACUcacccugguAUCCGACGCCGGGc -3'
miRNA:   3'- cCGaCUUgCGUGG---------UAGGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 52034 0.68 0.660865
Target:  5'- aGGCUGAGCGaGCgGUCuaCGGCGUCGGGa -3'
miRNA:   3'- -CCGACUUGCgUGgUAG--GCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 50092 0.68 0.660865
Target:  5'- cGGCUGGAU-CAuCCGcgCCGACGCCGu- -3'
miRNA:   3'- -CCGACUUGcGU-GGUa-GGCUGUGGCuc -5'
16388 3' -54.9 NC_004084.1 + 47987 0.67 0.72526
Target:  5'- uGCgGGAUGCACgAggacgUCGACugCGAGa -3'
miRNA:   3'- cCGaCUUGCGUGgUa----GGCUGugGCUC- -5'
16388 3' -54.9 NC_004084.1 + 47744 0.67 0.704042
Target:  5'- cGGCUcgccaguggGGGCGuCGCCGaccUCGACGCCGAa -3'
miRNA:   3'- -CCGA---------CUUGC-GUGGUa--GGCUGUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 44370 0.67 0.693324
Target:  5'- cGGC-GAGCGaCACC-UCCuGAaCACCGAu -3'
miRNA:   3'- -CCGaCUUGC-GUGGuAGG-CU-GUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 43779 0.68 0.628169
Target:  5'- -aCUGGGCGCucGCCggcggagaGUCCGGCGgCGAGg -3'
miRNA:   3'- ccGACUUGCG--UGG--------UAGGCUGUgGCUC- -5'
16388 3' -54.9 NC_004084.1 + 43302 0.66 0.776514
Target:  5'- aGCUGGAcuCGCACCAggagaUCGGCgucucACCGGGc -3'
miRNA:   3'- cCGACUU--GCGUGGUa----GGCUG-----UGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 41462 0.66 0.775521
Target:  5'- aGGCgcucGAagaccccgacgucGCGaCGCCcgCCGAUGCCGAa -3'
miRNA:   3'- -CCGa---CU-------------UGC-GUGGuaGGCUGUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 37328 0.66 0.786369
Target:  5'- cGCUGAACGCuucgGCgAUCCcgacGACGCCcAGc -3'
miRNA:   3'- cCGACUUGCG----UGgUAGG----CUGUGGcUC- -5'
16388 3' -54.9 NC_004084.1 + 37018 0.7 0.526996
Target:  5'- aGCUGGACGUcgACCGgaucaugcccgagCUGGCACCGAc -3'
miRNA:   3'- cCGACUUGCG--UGGUa------------GGCUGUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 35652 0.68 0.649979
Target:  5'- aGGC-GAACgucguuguagaGCugCGUCCGGCggcacucgccGCCGAGg -3'
miRNA:   3'- -CCGaCUUG-----------CGugGUAGGCUG----------UGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 32028 0.79 0.171384
Target:  5'- uGGUUGAGCGCGCCGg-CGACGuuGAGu -3'
miRNA:   3'- -CCGACUUGCGUGGUagGCUGUggCUC- -5'
16388 3' -54.9 NC_004084.1 + 29714 0.67 0.682548
Target:  5'- uGGCUGAGuCGCGUCGUCUGGCcguCCGc- -3'
miRNA:   3'- -CCGACUU-GCGUGGUAGGCUGu--GGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.