Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16388 | 3' | -54.9 | NC_004084.1 | + | 29017 | 0.71 | 0.46959 |
Target: 5'- cGCUGucGACGCGCUccCCGAgGCCGAc -3' miRNA: 3'- cCGAC--UUGCGUGGuaGGCUgUGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 28943 | 0.68 | 0.639077 |
Target: 5'- uGCgGAACGC-CCAcccguucgaggUUCGugACCGAGa -3' miRNA: 3'- cCGaCUUGCGuGGU-----------AGGCugUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 28417 | 0.66 | 0.746113 |
Target: 5'- cGCUGAcguCGuCACCAgcgaccaggUCGACGCCGGu -3' miRNA: 3'- cCGACUu--GC-GUGGUa--------GGCUGUGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 26353 | 0.67 | 0.682548 |
Target: 5'- cGC-GAGCgGCACCAUCUGGgACaCGGGc -3' miRNA: 3'- cCGaCUUG-CGUGGUAGGCUgUG-GCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 25561 | 0.71 | 0.479617 |
Target: 5'- cGGC---GCGCACCuUCUGACGCCGc- -3' miRNA: 3'- -CCGacuUGCGUGGuAGGCUGUGGCuc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 25039 | 0.67 | 0.735738 |
Target: 5'- gGGCUGGGCGaaGCUGUCC-ACAgCUGAGa -3' miRNA: 3'- -CCGACUUGCg-UGGUAGGcUGU-GGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 23933 | 0.67 | 0.693324 |
Target: 5'- cGCgaUGGACGCGgUaaguaGUCCGACACCGcGa -3' miRNA: 3'- cCG--ACUUGCGUgG-----UAGGCUGUGGCuC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 21493 | 0.66 | 0.786369 |
Target: 5'- cGGCgauaucugGAACGCGauucucgaaaCGUUCGcCGCCGAGu -3' miRNA: 3'- -CCGa-------CUUGCGUg---------GUAGGCuGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 18744 | 0.68 | 0.628169 |
Target: 5'- uGGCguaGGugGCACCuUCCGACucgUCGAu -3' miRNA: 3'- -CCGa--CUugCGUGGuAGGCUGu--GGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 15757 | 0.7 | 0.519665 |
Target: 5'- cGGCUgcGAGCGCcacguucuCCAUuuccucuucagucUCGACGCCGAGa -3' miRNA: 3'- -CCGA--CUUGCGu-------GGUA-------------GGCUGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 15674 | 0.66 | 0.766513 |
Target: 5'- uGCgucggGAACGUGgCAUCUGACAUUGAu -3' miRNA: 3'- cCGa----CUUGCGUgGUAGGCUGUGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 12986 | 0.66 | 0.786369 |
Target: 5'- uGGUUGu-CGCACCGacaUCCGGC-UCGAu -3' miRNA: 3'- -CCGACuuGCGUGGU---AGGCUGuGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 12827 | 0.66 | 0.745081 |
Target: 5'- aGGCUGAACGUgugcgcucucuggGCCAgUCgGGCAUCcAGa -3' miRNA: 3'- -CCGACUUGCG-------------UGGU-AGgCUGUGGcUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 11796 | 0.66 | 0.743012 |
Target: 5'- uGCUcAGCGC-CCAucucuucgauggcuUCCGACGCCGuGu -3' miRNA: 3'- cCGAcUUGCGuGGU--------------AGGCUGUGGCuC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 10860 | 0.71 | 0.468594 |
Target: 5'- uGCUGAcuugcguACGCACCcgCUGGC-CCGAa -3' miRNA: 3'- cCGACU-------UGCGUGGuaGGCUGuGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 10743 | 0.66 | 0.756375 |
Target: 5'- cGGUUG-GCGCGauCCAUCauCGACGCCGc- -3' miRNA: 3'- -CCGACuUGCGU--GGUAG--GCUGUGGCuc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 8724 | 1.11 | 0.000931 |
Target: 5'- uGGCUGAACGCACCAUCCGACACCGAGa -3' miRNA: 3'- -CCGACUUGCGUGGUAGGCUGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 7955 | 0.66 | 0.766513 |
Target: 5'- cGGC-GAACGaCACCG-CCGACcgcaggaCGAGg -3' miRNA: 3'- -CCGaCUUGC-GUGGUaGGCUGug-----GCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 5461 | 0.66 | 0.776514 |
Target: 5'- uGCUGugGACGC-CCAggUUCGACGUCGAGa -3' miRNA: 3'- cCGAC--UUGCGuGGU--AGGCUGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 4320 | 0.75 | 0.292696 |
Target: 5'- gGGCgucgucgaguccgGAGCGUucuCCA-CCGACGCCGAGg -3' miRNA: 3'- -CCGa------------CUUGCGu--GGUaGGCUGUGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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