Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16388 | 3' | -54.9 | NC_004084.1 | + | 8724 | 1.11 | 0.000931 |
Target: 5'- uGGCUGAACGCACCAUCCGACACCGAGa -3' miRNA: 3'- -CCGACUUGCGUGGUAGGCUGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 28417 | 0.66 | 0.746113 |
Target: 5'- cGCUGAcguCGuCACCAgcgaccaggUCGACGCCGGu -3' miRNA: 3'- cCGACUu--GC-GUGGUa--------GGCUGUGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 53128 | 0.66 | 0.756375 |
Target: 5'- aGUgGAugGCggACCAUCCG-CugCGGGa -3' miRNA: 3'- cCGaCUugCG--UGGUAGGCuGugGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 7955 | 0.66 | 0.766513 |
Target: 5'- cGGC-GAACGaCACCG-CCGACcgcaggaCGAGg -3' miRNA: 3'- -CCGaCUUGC-GUGGUaGGCUGug-----GCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 54528 | 0.66 | 0.766513 |
Target: 5'- cGGCaccUGGACgGCgagAUCGUCCGGCgcuguaucACCGAGg -3' miRNA: 3'- -CCG---ACUUG-CG---UGGUAGGCUG--------UGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 41462 | 0.66 | 0.775521 |
Target: 5'- aGGCgcucGAagaccccgacgucGCGaCGCCcgCCGAUGCCGAa -3' miRNA: 3'- -CCGa---CU-------------UGC-GUGGuaGGCUGUGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 12986 | 0.66 | 0.786369 |
Target: 5'- uGGUUGu-CGCACCGacaUCCGGC-UCGAu -3' miRNA: 3'- -CCGACuuGCGUGGU---AGGCUGuGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 37328 | 0.66 | 0.786369 |
Target: 5'- cGCUGAACGCuucgGCgAUCCcgacGACGCCcAGc -3' miRNA: 3'- cCGACUUGCG----UGgUAGG----CUGUGGcUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 21493 | 0.66 | 0.786369 |
Target: 5'- cGGCgauaucugGAACGCGauucucgaaaCGUUCGcCGCCGAGu -3' miRNA: 3'- -CCGa-------CUUGCGUg---------GUAGGCuGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 47987 | 0.67 | 0.72526 |
Target: 5'- uGCgGGAUGCACgAggacgUCGACugCGAGa -3' miRNA: 3'- cCGaCUUGCGUGgUa----GGCUGugGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 23933 | 0.67 | 0.693324 |
Target: 5'- cGCgaUGGACGCGgUaaguaGUCCGACACCGcGa -3' miRNA: 3'- cCG--ACUUGCGUgG-----UAGGCUGUGGCuC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 4320 | 0.75 | 0.292696 |
Target: 5'- gGGCgucgucgaguccgGAGCGUucuCCA-CCGACGCCGAGg -3' miRNA: 3'- -CCGa------------CUUGCGu--GGUaGGCUGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 37018 | 0.7 | 0.526996 |
Target: 5'- aGCUGGACGUcgACCGgaucaugcccgagCUGGCACCGAc -3' miRNA: 3'- cCGACUUGCG--UGGUa------------GGCUGUGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 55918 | 0.69 | 0.605284 |
Target: 5'- gGGCUGGaucgggaAUGCgAUCGUCgCGAaCACCGGGg -3' miRNA: 3'- -CCGACU-------UGCG-UGGUAG-GCU-GUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 43779 | 0.68 | 0.628169 |
Target: 5'- -aCUGGGCGCucGCCggcggagaGUCCGGCGgCGAGg -3' miRNA: 3'- ccGACUUGCG--UGG--------UAGGCUGUgGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 50092 | 0.68 | 0.660865 |
Target: 5'- cGGCUGGAU-CAuCCGcgCCGACGCCGu- -3' miRNA: 3'- -CCGACUUGcGU-GGUa-GGCUGUGGCuc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 52034 | 0.68 | 0.660865 |
Target: 5'- aGGCUGAGCGaGCgGUCuaCGGCGUCGGGa -3' miRNA: 3'- -CCGACUUGCgUGgUAG--GCUGUGGCUC- -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 29714 | 0.67 | 0.682548 |
Target: 5'- uGGCUGAGuCGCGUCGUCUGGCcguCCGc- -3' miRNA: 3'- -CCGACUU-GCGUGGUAGGCUGu--GGCuc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 44370 | 0.67 | 0.693324 |
Target: 5'- cGGC-GAGCGaCACC-UCCuGAaCACCGAu -3' miRNA: 3'- -CCGaCUUGC-GUGGuAGG-CU-GUGGCUc -5' |
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16388 | 3' | -54.9 | NC_004084.1 | + | 32028 | 0.79 | 0.171384 |
Target: 5'- uGGUUGAGCGCGCCGg-CGACGuuGAGu -3' miRNA: 3'- -CCGACUUGCGUGGUagGCUGUggCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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