miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16388 3' -54.9 NC_004084.1 + 5461 0.66 0.776514
Target:  5'- uGCUGugGACGC-CCAggUUCGACGUCGAGa -3'
miRNA:   3'- cCGAC--UUGCGuGGU--AGGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 25561 0.71 0.479617
Target:  5'- cGGC---GCGCACCuUCUGACGCCGc- -3'
miRNA:   3'- -CCGacuUGCGUGGuAGGCUGUGGCuc -5'
16388 3' -54.9 NC_004084.1 + 10860 0.71 0.468594
Target:  5'- uGCUGAcuugcguACGCACCcgCUGGC-CCGAa -3'
miRNA:   3'- cCGACU-------UGCGUGGuaGGCUGuGGCUc -5'
16388 3' -54.9 NC_004084.1 + 32028 0.79 0.171384
Target:  5'- uGGUUGAGCGCGCCGg-CGACGuuGAGu -3'
miRNA:   3'- -CCGACUUGCGUGGUagGCUGUggCUC- -5'
16388 3' -54.9 NC_004084.1 + 12827 0.66 0.745081
Target:  5'- aGGCUGAACGUgugcgcucucuggGCCAgUCgGGCAUCcAGa -3'
miRNA:   3'- -CCGACUUGCG-------------UGGU-AGgCUGUGGcUC- -5'
16388 3' -54.9 NC_004084.1 + 11796 0.66 0.743012
Target:  5'- uGCUcAGCGC-CCAucucuucgauggcuUCCGACGCCGuGu -3'
miRNA:   3'- cCGAcUUGCGuGGU--------------AGGCUGUGGCuC- -5'
16388 3' -54.9 NC_004084.1 + 47744 0.67 0.704042
Target:  5'- cGGCUcgccaguggGGGCGuCGCCGaccUCGACGCCGAa -3'
miRNA:   3'- -CCGA---------CUUGC-GUGGUa--GGCUGUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 833 0.67 0.682548
Target:  5'- cGGcCUGGugGUccagcGCC-UCCGACGUCGAGa -3'
miRNA:   3'- -CC-GACUugCG-----UGGuAGGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 55427 0.66 0.776514
Target:  5'- uGCUGuuugGCGCgAUCuCGAUACUGAGa -3'
miRNA:   3'- cCGACuug-CGUGgUAG-GCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 15757 0.7 0.519665
Target:  5'- cGGCUgcGAGCGCcacguucuCCAUuuccucuucagucUCGACGCCGAGa -3'
miRNA:   3'- -CCGA--CUUGCGu-------GGUA-------------GGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 28943 0.68 0.639077
Target:  5'- uGCgGAACGC-CCAcccguucgaggUUCGugACCGAGa -3'
miRNA:   3'- cCGaCUUGCGuGGU-----------AGGCugUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 35652 0.68 0.649979
Target:  5'- aGGC-GAACgucguuguagaGCugCGUCCGGCggcacucgccGCCGAGg -3'
miRNA:   3'- -CCGaCUUG-----------CGugGUAGGCUG----------UGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 43302 0.66 0.776514
Target:  5'- aGCUGGAcuCGCACCAggagaUCGGCgucucACCGGGc -3'
miRNA:   3'- cCGACUU--GCGUGGUa----GGCUG-----UGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 18744 0.68 0.628169
Target:  5'- uGGCguaGGugGCACCuUCCGACucgUCGAu -3'
miRNA:   3'- -CCGa--CUugCGUGGuAGGCUGu--GGCUc -5'
16388 3' -54.9 NC_004084.1 + 15674 0.66 0.766513
Target:  5'- uGCgucggGAACGUGgCAUCUGACAUUGAu -3'
miRNA:   3'- cCGa----CUUGCGUgGUAGGCUGUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 26353 0.67 0.682548
Target:  5'- cGC-GAGCgGCACCAUCUGGgACaCGGGc -3'
miRNA:   3'- cCGaCUUG-CGUGGUAGGCUgUG-GCUC- -5'
16388 3' -54.9 NC_004084.1 + 52716 0.68 0.628169
Target:  5'- aGCcGAG-GCACUcacccugguAUCCGACGCCGGGc -3'
miRNA:   3'- cCGaCUUgCGUGG---------UAGGCUGUGGCUC- -5'
16388 3' -54.9 NC_004084.1 + 29017 0.71 0.46959
Target:  5'- cGCUGucGACGCGCUccCCGAgGCCGAc -3'
miRNA:   3'- cCGAC--UUGCGUGGuaGGCUgUGGCUc -5'
16388 3' -54.9 NC_004084.1 + 10743 0.66 0.756375
Target:  5'- cGGUUG-GCGCGauCCAUCauCGACGCCGc- -3'
miRNA:   3'- -CCGACuUGCGU--GGUAG--GCUGUGGCuc -5'
16388 3' -54.9 NC_004084.1 + 25039 0.67 0.735738
Target:  5'- gGGCUGGGCGaaGCUGUCC-ACAgCUGAGa -3'
miRNA:   3'- -CCGACUUGCg-UGGUAGGcUGU-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.