miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16388 5' -60 NC_004084.1 + 51787 0.66 0.506548
Target:  5'- aACgCCGGCgaugUCcGuCCGGUACGggaaCGACg -3'
miRNA:   3'- gUG-GGCCGa---AGuC-GGCCAUGCg---GCUG- -5'
16388 5' -60 NC_004084.1 + 2607 0.66 0.506548
Target:  5'- cCACCCGuGCgacgacgaUCcGCCGGaggagUGgGCCGACu -3'
miRNA:   3'- -GUGGGC-CGa-------AGuCGGCC-----AUgCGGCUG- -5'
16388 5' -60 NC_004084.1 + 2672 0.66 0.496513
Target:  5'- uCACCuCGGCgUCGuCCGGgAUGCCGuCa -3'
miRNA:   3'- -GUGG-GCCGaAGUcGGCCaUGCGGCuG- -5'
16388 5' -60 NC_004084.1 + 29332 0.66 0.486569
Target:  5'- aACCUGGUUcgAGCCGG-GCG-CGACg -3'
miRNA:   3'- gUGGGCCGAagUCGGCCaUGCgGCUG- -5'
16388 5' -60 NC_004084.1 + 28919 0.66 0.486569
Target:  5'- uGCCCGagaGCgacgUCGGCCucGGgagcGCGUCGACa -3'
miRNA:   3'- gUGGGC---CGa---AGUCGG--CCa---UGCGGCUG- -5'
16388 5' -60 NC_004084.1 + 33111 0.66 0.483604
Target:  5'- uCACUCGGCUU-GGCUGGUcuuuaaacgguuauACaCCGACu -3'
miRNA:   3'- -GUGGGCCGAAgUCGGCCA--------------UGcGGCUG- -5'
16388 5' -60 NC_004084.1 + 22556 0.66 0.47672
Target:  5'- -cCCCGGCgUC-GCCGGgguCGgCGGCc -3'
miRNA:   3'- guGGGCCGaAGuCGGCCau-GCgGCUG- -5'
16388 5' -60 NC_004084.1 + 42811 0.67 0.447789
Target:  5'- aACCCGGUggacGCCGGUGauuCCGAUg -3'
miRNA:   3'- gUGGGCCGaaguCGGCCAUgc-GGCUG- -5'
16388 5' -60 NC_004084.1 + 8598 0.67 0.447789
Target:  5'- aCGCCCGGUacUUCAuGCgCGGcgACGaCGACu -3'
miRNA:   3'- -GUGGGCCG--AAGU-CG-GCCa-UGCgGCUG- -5'
16388 5' -60 NC_004084.1 + 9939 0.67 0.438364
Target:  5'- cCGCCgGGCUcccgcgUgAGCCGcccuCGCCGACc -3'
miRNA:   3'- -GUGGgCCGA------AgUCGGCcau-GCGGCUG- -5'
16388 5' -60 NC_004084.1 + 45539 0.67 0.438364
Target:  5'- gGCUCGGCUUCGauccGCgGGcgGCGUCaGACa -3'
miRNA:   3'- gUGGGCCGAAGU----CGgCCa-UGCGG-CUG- -5'
16388 5' -60 NC_004084.1 + 57495 0.67 0.438364
Target:  5'- cCACCuCGaGC-UC-GCCGGcgACGUCGACg -3'
miRNA:   3'- -GUGG-GC-CGaAGuCGGCCa-UGCGGCUG- -5'
16388 5' -60 NC_004084.1 + 48797 0.67 0.429052
Target:  5'- gACCgCGGUgagUUGGCCG--ACGCCGAUg -3'
miRNA:   3'- gUGG-GCCGa--AGUCGGCcaUGCGGCUG- -5'
16388 5' -60 NC_004084.1 + 38703 0.67 0.401835
Target:  5'- --aCCGGCUUCAGCCGcGgggaguCGUuccgCGACg -3'
miRNA:   3'- gugGGCCGAAGUCGGC-Cau----GCG----GCUG- -5'
16388 5' -60 NC_004084.1 + 43881 0.67 0.401835
Target:  5'- -uCCCGGCgcuccUCGccGCCGGacucucCGCCGGCg -3'
miRNA:   3'- guGGGCCGa----AGU--CGGCCau----GCGGCUG- -5'
16388 5' -60 NC_004084.1 + 17101 0.68 0.393009
Target:  5'- uCACCCGcGC-UC-GCCGGUccgcuccaggACGUCGAUg -3'
miRNA:   3'- -GUGGGC-CGaAGuCGGCCA----------UGCGGCUG- -5'
16388 5' -60 NC_004084.1 + 45620 0.68 0.3673
Target:  5'- -uCCCGGCUgacaaccuGUCGGU-CGUCGACg -3'
miRNA:   3'- guGGGCCGAagu-----CGGCCAuGCGGCUG- -5'
16388 5' -60 NC_004084.1 + 29254 0.68 0.358991
Target:  5'- gCGCCCGGCUcgaacCAGgUuGUACGcCCGGCa -3'
miRNA:   3'- -GUGGGCCGAa----GUCgGcCAUGC-GGCUG- -5'
16388 5' -60 NC_004084.1 + 53288 0.68 0.350814
Target:  5'- -uCCUGGCgacCAGCCGcgaGUACGuuGACc -3'
miRNA:   3'- guGGGCCGaa-GUCGGC---CAUGCggCUG- -5'
16388 5' -60 NC_004084.1 + 44582 0.69 0.327086
Target:  5'- gGCCUGGCUgccacgcagaggUCAucGCCGaGUGgGCCGAUc -3'
miRNA:   3'- gUGGGCCGA------------AGU--CGGC-CAUgCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.