miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16389 3' -52.9 NC_004084.1 + 46804 0.66 0.897238
Target:  5'- aUCGAUGugcUCGCC-CGACcacucgucgcgguagACG-UCGCCg -3'
miRNA:   3'- -AGCUGCu--AGUGGaGCUG---------------UGCuAGCGG- -5'
16389 3' -52.9 NC_004084.1 + 43596 0.66 0.897238
Target:  5'- gCGAUGAagacgugcuccggguUCGCCUCGAUcUGGUCGa- -3'
miRNA:   3'- aGCUGCU---------------AGUGGAGCUGuGCUAGCgg -5'
16389 3' -52.9 NC_004084.1 + 21492 0.66 0.89444
Target:  5'- aCGGCGAU-AUCUgGaACGCGAuucucgaaacguUCGCCg -3'
miRNA:   3'- aGCUGCUAgUGGAgC-UGUGCU------------AGCGG- -5'
16389 3' -52.9 NC_004084.1 + 41786 0.66 0.89444
Target:  5'- gUCGACGA-CGagggCGuCACGAUCGaCCu -3'
miRNA:   3'- -AGCUGCUaGUgga-GCuGUGCUAGC-GG- -5'
16389 3' -52.9 NC_004084.1 + 41571 0.66 0.89444
Target:  5'- cCGGCGAUCGCgUCcGugAgcuagcggaGAUCGUCg -3'
miRNA:   3'- aGCUGCUAGUGgAG-CugUg--------CUAGCGG- -5'
16389 3' -52.9 NC_004084.1 + 44910 0.66 0.89444
Target:  5'- cCGAccuCGGUCAgCUCGAUACcGUCaCCg -3'
miRNA:   3'- aGCU---GCUAGUgGAGCUGUGcUAGcGG- -5'
16389 3' -52.9 NC_004084.1 + 2067 0.66 0.89444
Target:  5'- cUCGACGAcguagcucugcaUCccguuguCCUCGAuCACGAugaUCGCg -3'
miRNA:   3'- -AGCUGCU------------AGu------GGAGCU-GUGCU---AGCGg -5'
16389 3' -52.9 NC_004084.1 + 54462 0.66 0.89444
Target:  5'- aCGGCGAUCGCgUCagaGUGAUCuGCCg -3'
miRNA:   3'- aGCUGCUAGUGgAGcugUGCUAG-CGG- -5'
16389 3' -52.9 NC_004084.1 + 30801 0.66 0.89444
Target:  5'- gUCGAacagcccauCGAUCAgcuCCUCGACGCGcUCcuGCUc -3'
miRNA:   3'- -AGCU---------GCUAGU---GGAGCUGUGCuAG--CGG- -5'
16389 3' -52.9 NC_004084.1 + 51308 0.66 0.89444
Target:  5'- aCGuCGAgCugCUCGACGCaccaCGCCc -3'
miRNA:   3'- aGCuGCUaGugGAGCUGUGcua-GCGG- -5'
16389 3' -52.9 NC_004084.1 + 11973 0.66 0.8916
Target:  5'- aUGACGAUCucggcaucgaaguCUUCGACGuccgGAUCGUCg -3'
miRNA:   3'- aGCUGCUAGu------------GGAGCUGUg---CUAGCGG- -5'
16389 3' -52.9 NC_004084.1 + 15003 0.66 0.887262
Target:  5'- uUCGGCGGUCugUUCG-CugGGg-GCUu -3'
miRNA:   3'- -AGCUGCUAGugGAGCuGugCUagCGG- -5'
16389 3' -52.9 NC_004084.1 + 23013 0.66 0.887262
Target:  5'- aCGACGAUgACC-CGu--CGGUCGUg -3'
miRNA:   3'- aGCUGCUAgUGGaGCuguGCUAGCGg -5'
16389 3' -52.9 NC_004084.1 + 21959 0.66 0.887262
Target:  5'- aCGACGucucCGCCgagaUCGACACGGU-GCa -3'
miRNA:   3'- aGCUGCua--GUGG----AGCUGUGCUAgCGg -5'
16389 3' -52.9 NC_004084.1 + 51916 0.66 0.887262
Target:  5'- -aGugGGuUCAUCcaguUCGACACGuUCGCUc -3'
miRNA:   3'- agCugCU-AGUGG----AGCUGUGCuAGCGG- -5'
16389 3' -52.9 NC_004084.1 + 20228 0.66 0.887262
Target:  5'- gUCGACG-UCA-UUCGAgAUGA-CGCCg -3'
miRNA:   3'- -AGCUGCuAGUgGAGCUgUGCUaGCGG- -5'
16389 3' -52.9 NC_004084.1 + 55571 0.66 0.887262
Target:  5'- cUCGuCGGcCugUUCGGCAUccUCGCCa -3'
miRNA:   3'- -AGCuGCUaGugGAGCUGUGcuAGCGG- -5'
16389 3' -52.9 NC_004084.1 + 7236 0.66 0.887262
Target:  5'- cUGAgGAUUuCCUCGACugGGUC-Ca -3'
miRNA:   3'- aGCUgCUAGuGGAGCUGugCUAGcGg -5'
16389 3' -52.9 NC_004084.1 + 30481 0.66 0.887262
Target:  5'- gUCGACGucggcuccauAUUACUaCGAUuggugACGAUUGCCa -3'
miRNA:   3'- -AGCUGC----------UAGUGGaGCUG-----UGCUAGCGG- -5'
16389 3' -52.9 NC_004084.1 + 5224 0.66 0.887262
Target:  5'- -aGACGAUCACggaagaCUCGACAaguUGGcuUCGCg -3'
miRNA:   3'- agCUGCUAGUG------GAGCUGU---GCU--AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.