Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16389 | 5' | -53.2 | NC_004084.1 | + | 35471 | 0.74 | 0.34313 |
Target: 5'- -cAG-GAGCAGGUCGAGG-CggCGAUCg -3' miRNA: 3'- caUCgCUCGUCCAGUUCCuGa-GCUAG- -5' |
|||||||
16389 | 5' | -53.2 | NC_004084.1 | + | 30120 | 0.77 | 0.25278 |
Target: 5'- cUGGgGAGCGGGcCGGGGaacuGCUCGAUCu -3' miRNA: 3'- cAUCgCUCGUCCaGUUCC----UGAGCUAG- -5' |
|||||||
16389 | 5' | -53.2 | NC_004084.1 | + | 9109 | 1.11 | 0.001198 |
Target: 5'- aGUAGCGAGCAGGUCAAGGACUCGAUCg -3' miRNA: 3'- -CAUCGCUCGUCCAGUUCCUGAGCUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home