miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1639 3' -53.9 NC_001347.2 + 38983 0.66 0.992843
Target:  5'- cCACCGUCG------GGuCGGCUGCGGg -3'
miRNA:   3'- -GUGGCAGCagauguUCuGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 149548 0.66 0.992843
Target:  5'- -cUCGUgCGUgugCUACGAGACGgggggaaacaccGCCGUGGa -3'
miRNA:   3'- guGGCA-GCA---GAUGUUCUGC------------UGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 157259 0.66 0.992843
Target:  5'- cCACCGgcgcaGUUUGCGgcgcAGACGuCgGCGGu -3'
miRNA:   3'- -GUGGCag---CAGAUGU----UCUGCuGgCGCC- -5'
1639 3' -53.9 NC_001347.2 + 196968 0.66 0.992843
Target:  5'- gCGCCGcCGaCgccCGAGACGGCgCGCGu -3'
miRNA:   3'- -GUGGCaGCaGau-GUUCUGCUG-GCGCc -5'
1639 3' -53.9 NC_001347.2 + 81482 0.66 0.99184
Target:  5'- uGgCGUCGUCgcucgGCGGGuGCGcACCGCcGGu -3'
miRNA:   3'- gUgGCAGCAGa----UGUUC-UGC-UGGCG-CC- -5'
1639 3' -53.9 NC_001347.2 + 100551 0.66 0.99184
Target:  5'- aCugCGUCGUaggUACcAGAUGuucACCGUGGc -3'
miRNA:   3'- -GugGCAGCAg--AUGuUCUGC---UGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 52517 0.66 0.99184
Target:  5'- gCGCCGUgGUgCUgggucagugccaGCGGGAa-ACCGCGGa -3'
miRNA:   3'- -GUGGCAgCA-GA------------UGUUCUgcUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 8758 0.66 0.99184
Target:  5'- uCAUUGUUGUCUcguCGGGuuucCGACgGCGGa -3'
miRNA:   3'- -GUGGCAGCAGAu--GUUCu---GCUGgCGCC- -5'
1639 3' -53.9 NC_001347.2 + 136459 0.66 0.99184
Target:  5'- uUACCGgCGcaugcGCAGGGCGAcccucCCGCGGg -3'
miRNA:   3'- -GUGGCaGCaga--UGUUCUGCU-----GGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 181210 0.66 0.990729
Target:  5'- uCGgCGUCGUCUACGGcuACGACCcCGc -3'
miRNA:   3'- -GUgGCAGCAGAUGUUc-UGCUGGcGCc -5'
1639 3' -53.9 NC_001347.2 + 173670 0.66 0.990729
Target:  5'- gGCgGUgG-CgGCAAGAagcaCGACCGCGGu -3'
miRNA:   3'- gUGgCAgCaGaUGUUCU----GCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 27630 0.66 0.989502
Target:  5'- gCGCCaUCGUCUuccuUAuGAUGACCGUGa -3'
miRNA:   3'- -GUGGcAGCAGAu---GUuCUGCUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 132650 0.66 0.989502
Target:  5'- aCACCGUCuUCUcCGGGACGucuuGCCGUc- -3'
miRNA:   3'- -GUGGCAGcAGAuGUUCUGC----UGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 21744 0.66 0.989242
Target:  5'- cUACCGUCGguccugucucugcUCUGCGcuacggcgcugGGACuuuggcugcugcgGGCCGCGGc -3'
miRNA:   3'- -GUGGCAGC-------------AGAUGU-----------UCUG-------------CUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 117421 0.66 0.98667
Target:  5'- aCACCGUCGcC-ACGGaguccGGCGgAUCGCGGc -3'
miRNA:   3'- -GUGGCAGCaGaUGUU-----CUGC-UGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 15570 0.66 0.986514
Target:  5'- gGCCGcUgGUCauCAGGACGAuacgggcCCGCGGc -3'
miRNA:   3'- gUGGC-AgCAGauGUUCUGCU-------GGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 100592 0.67 0.98505
Target:  5'- uCACCGUCGcaaaaACAGGguACGGCCaCGGg -3'
miRNA:   3'- -GUGGCAGCaga--UGUUC--UGCUGGcGCC- -5'
1639 3' -53.9 NC_001347.2 + 165712 0.67 0.98505
Target:  5'- gCGCC-UCgGUCUGCAGGACGG-CGCu- -3'
miRNA:   3'- -GUGGcAG-CAGAUGUUCUGCUgGCGcc -5'
1639 3' -53.9 NC_001347.2 + 7634 0.67 0.983285
Target:  5'- gCGCCGUCGUUguu--GACGauGCCGCa- -3'
miRNA:   3'- -GUGGCAGCAGauguuCUGC--UGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 26736 0.67 0.981367
Target:  5'- gGCCGUCcUUUucCAAGACGugCGCu- -3'
miRNA:   3'- gUGGCAGcAGAu-GUUCUGCugGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.