miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1639 3' -53.9 NC_001347.2 + 130706 1.1 0.0073
Target:  5'- aCACCGUCGUCUACAAGACGACCGCGGu -3'
miRNA:   3'- -GUGGCAGCAGAUGUUCUGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 59792 0.76 0.684856
Target:  5'- uGCUGcCuaUCUACGAGACGGCCGCGa -3'
miRNA:   3'- gUGGCaGc-AGAUGUUCUGCUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 184258 0.75 0.723622
Target:  5'- uGCCGUCGUCgUugGAGACGGaggguucugcCCGCaGGa -3'
miRNA:   3'- gUGGCAGCAG-AugUUCUGCU----------GGCG-CC- -5'
1639 3' -53.9 NC_001347.2 + 150181 0.75 0.733151
Target:  5'- gGCCGUuacUGUCUGCAGGACG-CCGUa- -3'
miRNA:   3'- gUGGCA---GCAGAUGUUCUGCuGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 77301 0.74 0.779394
Target:  5'- -gUCGUCGUaCUugGGcGugGGCCGCGGc -3'
miRNA:   3'- guGGCAGCA-GAugUU-CugCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 67940 0.73 0.796212
Target:  5'- uCACCGUCGuUCUcggaggaGgGAGGCGGCCGCc- -3'
miRNA:   3'- -GUGGCAGC-AGA-------UgUUCUGCUGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 97898 0.73 0.805725
Target:  5'- --aCGUCGUCUucgGCGucGGGCGGCgGCGGu -3'
miRNA:   3'- gugGCAGCAGA---UGU--UCUGCUGgCGCC- -5'
1639 3' -53.9 NC_001347.2 + 18171 0.73 0.830731
Target:  5'- gCACCGUcuaCGUCUACGacuGGGaGACCGaCGGg -3'
miRNA:   3'- -GUGGCA---GCAGAUGU---UCUgCUGGC-GCC- -5'
1639 3' -53.9 NC_001347.2 + 159441 0.73 0.830731
Target:  5'- -uCCGUCGUCgucu--GCGGCCGCGGc -3'
miRNA:   3'- guGGCAGCAGauguucUGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 25883 0.72 0.861679
Target:  5'- gGCUGUaCG-CUACGAGACG-CCGCuGGa -3'
miRNA:   3'- gUGGCA-GCaGAUGUUCUGCuGGCG-CC- -5'
1639 3' -53.9 NC_001347.2 + 192175 0.72 0.861679
Target:  5'- cCGCCGUC-UCcggAUGAG-CGGCCGCGGc -3'
miRNA:   3'- -GUGGCAGcAGa--UGUUCuGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 117868 0.71 0.882878
Target:  5'- gACCG-CGUCagACGGGGCGACCacgucagacgggGCGGc -3'
miRNA:   3'- gUGGCaGCAGa-UGUUCUGCUGG------------CGCC- -5'
1639 3' -53.9 NC_001347.2 + 81550 0.71 0.882878
Target:  5'- uCGCCGUCGUC-ACGuGGCaGCgGCGGc -3'
miRNA:   3'- -GUGGCAGCAGaUGUuCUGcUGgCGCC- -5'
1639 3' -53.9 NC_001347.2 + 200974 0.71 0.882878
Target:  5'- aUACCGgggcCGUCUACGccugcGACGugCGCGa -3'
miRNA:   3'- -GUGGCa---GCAGAUGUu----CUGCugGCGCc -5'
1639 3' -53.9 NC_001347.2 + 193094 0.71 0.889534
Target:  5'- gGCCGUCGcaagggCUGCucGGCGGCCaCGGc -3'
miRNA:   3'- gUGGCAGCa-----GAUGuuCUGCUGGcGCC- -5'
1639 3' -53.9 NC_001347.2 + 135601 0.71 0.889534
Target:  5'- cUACCGUCGUCgucgGCc-GACcGCCGCGa -3'
miRNA:   3'- -GUGGCAGCAGa---UGuuCUGcUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 173583 0.71 0.895977
Target:  5'- uGCCGgcgGUCUGCAugacGACGGCC-CGGg -3'
miRNA:   3'- gUGGCag-CAGAUGUu---CUGCUGGcGCC- -5'
1639 3' -53.9 NC_001347.2 + 191823 0.71 0.902205
Target:  5'- aUACCGUCGU--GCGAccuuuUGACCGCGGu -3'
miRNA:   3'- -GUGGCAGCAgaUGUUcu---GCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 12240 0.7 0.919573
Target:  5'- aACCGUguggUGUCUAgAccGCGAUCGCGGg -3'
miRNA:   3'- gUGGCA----GCAGAUgUucUGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 148195 0.7 0.934934
Target:  5'- cCACCGUCGUCUgauGCAuccACGGCgGCu- -3'
miRNA:   3'- -GUGGCAGCAGA---UGUuc-UGCUGgCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.