miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1639 3' -53.9 NC_001347.2 + 189947 0.67 0.979288
Target:  5'- cCACCGUCGUCUACGgccaaaAGcaGCGuaucgaaugcGCCGCc- -3'
miRNA:   3'- -GUGGCAGCAGAUGU------UC--UGC----------UGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 1850 0.67 0.979288
Target:  5'- gCACCccgcGUCG-CUGCu-GACGGCCGUGc -3'
miRNA:   3'- -GUGG----CAGCaGAUGuuCUGCUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 65203 0.67 0.979071
Target:  5'- uCGCCGgcCGUgUACAcgugcguGGACGaccuguGCCGCGGc -3'
miRNA:   3'- -GUGGCa-GCAgAUGU-------UCUGC------UGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 92993 0.67 0.978632
Target:  5'- aCACC-UCGggCUGCGagagccaacgucgcAGGCGuCCGCGGc -3'
miRNA:   3'- -GUGGcAGCa-GAUGU--------------UCUGCuGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 212937 0.67 0.977042
Target:  5'- uUACCGgCG---GCAuAGugGACCGCGGu -3'
miRNA:   3'- -GUGGCaGCagaUGU-UCugCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 106217 0.67 0.977042
Target:  5'- cCGCCGgccaCGagccagACGAGGCGGCgGCGGu -3'
miRNA:   3'- -GUGGCa---GCaga---UGUUCUGCUGgCGCC- -5'
1639 3' -53.9 NC_001347.2 + 191983 0.67 0.977042
Target:  5'- cCACCGcagCGgcgGCGacGGACGGCgGCGGu -3'
miRNA:   3'- -GUGGCa--GCagaUGU--UCUGCUGgCGCC- -5'
1639 3' -53.9 NC_001347.2 + 15049 0.68 0.974871
Target:  5'- aCGCCGUgGUaugugcuaggcgugACGGGACGuCCGCGa -3'
miRNA:   3'- -GUGGCAgCAga------------UGUUCUGCuGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 41413 0.68 0.974621
Target:  5'- gGCCGcCGUgUACAguuAGaACGuccauCCGCGGg -3'
miRNA:   3'- gUGGCaGCAgAUGU---UC-UGCu----GGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 30591 0.68 0.97202
Target:  5'- gCGCCGggCGgcuucCUGC-GGcCGGCCGCGGu -3'
miRNA:   3'- -GUGGCa-GCa----GAUGuUCuGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 114323 0.68 0.966253
Target:  5'- aCGCCGUgcuuaGUC-GCAAGACG-CCGCa- -3'
miRNA:   3'- -GUGGCAg----CAGaUGUUCUGCuGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 6590 0.68 0.966253
Target:  5'- gGCC-UCGUCUcaccgACGAGAcacCGACCGCa- -3'
miRNA:   3'- gUGGcAGCAGA-----UGUUCU---GCUGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 90247 0.68 0.96437
Target:  5'- aGCgCGUCGUCUACGAcGGCGuuuggcccgagacccACCGCc- -3'
miRNA:   3'- gUG-GCAGCAGAUGUU-CUGC---------------UGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 81788 0.68 0.963075
Target:  5'- aCGCCGUcucgcgcauuaaCGUgUGCAGaccGugGACCGCGu -3'
miRNA:   3'- -GUGGCA------------GCAgAUGUU---CugCUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 179766 0.69 0.959694
Target:  5'- cCACCGUgaUGUCaACAcuGACGAaauaCGCGGa -3'
miRNA:   3'- -GUGGCA--GCAGaUGUu-CUGCUg---GCGCC- -5'
1639 3' -53.9 NC_001347.2 + 193742 0.69 0.956105
Target:  5'- cCGCCGcUCGUugcgcCUACGuagAGGCGcACCGCGa -3'
miRNA:   3'- -GUGGC-AGCA-----GAUGU---UCUGC-UGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 89737 0.69 0.955735
Target:  5'- cCGCCGUCGUCgccugcgGCGucGGCGcagggaauucguaGCCGCGa -3'
miRNA:   3'- -GUGGCAGCAGa------UGUu-CUGC-------------UGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 184939 0.69 0.952306
Target:  5'- aGCCGucugcagcUCGUCggccgGCGuGGGCGGCuCGCGGa -3'
miRNA:   3'- gUGGC--------AGCAGa----UGU-UCUGCUG-GCGCC- -5'
1639 3' -53.9 NC_001347.2 + 182293 0.69 0.948292
Target:  5'- gCGgCGUCGUUgcCGGGGCGGcugcuccagguCCGCGGa -3'
miRNA:   3'- -GUgGCAGCAGauGUUCUGCU-----------GGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 98049 0.69 0.948292
Target:  5'- aCGCCG-CGgcgGCA--GCGGCCGCGGc -3'
miRNA:   3'- -GUGGCaGCagaUGUucUGCUGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.