miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1639 3' -53.9 NC_001347.2 + 1850 0.67 0.979288
Target:  5'- gCACCccgcGUCG-CUGCu-GACGGCCGUGc -3'
miRNA:   3'- -GUGG----CAGCaGAUGuuCUGCUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 6590 0.68 0.966253
Target:  5'- gGCC-UCGUCUcaccgACGAGAcacCGACCGCa- -3'
miRNA:   3'- gUGGcAGCAGA-----UGUUCU---GCUGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 7634 0.67 0.983285
Target:  5'- gCGCCGUCGUUguu--GACGauGCCGCa- -3'
miRNA:   3'- -GUGGCAGCAGauguuCUGC--UGGCGcc -5'
1639 3' -53.9 NC_001347.2 + 8758 0.66 0.99184
Target:  5'- uCAUUGUUGUCUcguCGGGuuucCGACgGCGGa -3'
miRNA:   3'- -GUGGCAGCAGAu--GUUCu---GCUGgCGCC- -5'
1639 3' -53.9 NC_001347.2 + 12240 0.7 0.919573
Target:  5'- aACCGUguggUGUCUAgAccGCGAUCGCGGg -3'
miRNA:   3'- gUGGCA----GCAGAUgUucUGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 15049 0.68 0.974871
Target:  5'- aCGCCGUgGUaugugcuaggcgugACGGGACGuCCGCGa -3'
miRNA:   3'- -GUGGCAgCAga------------UGUUCUGCuGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 15570 0.66 0.986514
Target:  5'- gGCCGcUgGUCauCAGGACGAuacgggcCCGCGGc -3'
miRNA:   3'- gUGGC-AgCAGauGUUCUGCU-------GGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 18171 0.73 0.830731
Target:  5'- gCACCGUcuaCGUCUACGacuGGGaGACCGaCGGg -3'
miRNA:   3'- -GUGGCA---GCAGAUGU---UCUgCUGGC-GCC- -5'
1639 3' -53.9 NC_001347.2 + 18721 0.69 0.94406
Target:  5'- aCugCGUgGUCUcuGCcgcuuCGACCGCGGa -3'
miRNA:   3'- -GugGCAgCAGA--UGuucu-GCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 21744 0.66 0.989242
Target:  5'- cUACCGUCGguccugucucugcUCUGCGcuacggcgcugGGACuuuggcugcugcgGGCCGCGGc -3'
miRNA:   3'- -GUGGCAGC-------------AGAUGU-----------UCUG-------------CUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 25883 0.72 0.861679
Target:  5'- gGCUGUaCG-CUACGAGACG-CCGCuGGa -3'
miRNA:   3'- gUGGCA-GCaGAUGUUCUGCuGGCG-CC- -5'
1639 3' -53.9 NC_001347.2 + 26736 0.67 0.981367
Target:  5'- gGCCGUCcUUUucCAAGACGugCGCu- -3'
miRNA:   3'- gUGGCAGcAGAu-GUUCUGCugGCGcc -5'
1639 3' -53.9 NC_001347.2 + 27630 0.66 0.989502
Target:  5'- gCGCCaUCGUCUuccuUAuGAUGACCGUGa -3'
miRNA:   3'- -GUGGcAGCAGAu---GUuCUGCUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 30591 0.68 0.97202
Target:  5'- gCGCCGggCGgcuucCUGC-GGcCGGCCGCGGu -3'
miRNA:   3'- -GUGGCa-GCa----GAUGuUCuGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 38983 0.66 0.992843
Target:  5'- cCACCGUCG------GGuCGGCUGCGGg -3'
miRNA:   3'- -GUGGCAGCagauguUCuGCUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 41413 0.68 0.974621
Target:  5'- gGCCGcCGUgUACAguuAGaACGuccauCCGCGGg -3'
miRNA:   3'- gUGGCaGCAgAUGU---UC-UGCu----GGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 52517 0.66 0.99184
Target:  5'- gCGCCGUgGUgCUgggucagugccaGCGGGAa-ACCGCGGa -3'
miRNA:   3'- -GUGGCAgCA-GA------------UGUUCUgcUGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 59792 0.76 0.684856
Target:  5'- uGCUGcCuaUCUACGAGACGGCCGCGa -3'
miRNA:   3'- gUGGCaGc-AGAUGUUCUGCUGGCGCc -5'
1639 3' -53.9 NC_001347.2 + 65203 0.67 0.979071
Target:  5'- uCGCCGgcCGUgUACAcgugcguGGACGaccuguGCCGCGGc -3'
miRNA:   3'- -GUGGCa-GCAgAUGU-------UCUGC------UGGCGCC- -5'
1639 3' -53.9 NC_001347.2 + 67940 0.73 0.796212
Target:  5'- uCACCGUCGuUCUcggaggaGgGAGGCGGCCGCc- -3'
miRNA:   3'- -GUGGCAGC-AGA-------UgUUCUGCUGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.