Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1639 | 5' | -66.3 | NC_001347.2 | + | 63753 | 0.66 | 0.612781 |
Target: 5'- aCCCUucgaucgCGGCGCCCCacUUGCCGcUGUa- -3' miRNA: 3'- aGGGG-------GCCGCGGGG--AGCGGCcACAgg -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 126095 | 0.66 | 0.60451 |
Target: 5'- aUCCCCCucucGGCGCUCaUCGCCa--GUCUg -3' miRNA: 3'- -AGGGGG----CCGCGGGgAGCGGccaCAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 39345 | 0.66 | 0.586187 |
Target: 5'- gCgCCCGGCGgCCCgCGggguucuacCCGGUGgacgCCg -3' miRNA: 3'- aGgGGGCCGCgGGGaGC---------GGCCACa---GG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 36527 | 0.66 | 0.586187 |
Target: 5'- gUCCgggCUCGGUGaCCUCUCgGUCGGcgUGUCCa -3' miRNA: 3'- -AGG---GGGCCGC-GGGGAG-CGGCC--ACAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 86562 | 0.66 | 0.577062 |
Target: 5'- gCCCCacaugaugauggCGGCGCCUCgguauuuucccCGCCGGUGg-- -3' miRNA: 3'- aGGGG------------GCCGCGGGGa----------GCGGCCACagg -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 8481 | 0.66 | 0.562532 |
Target: 5'- aCCCCCGuaGUaggcaaCCUCGCcCauaggucuccgaacaGGUGUCCa -3' miRNA: 3'- aGGGGGCcgCGg-----GGAGCG-G---------------CCACAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 116688 | 0.66 | 0.558914 |
Target: 5'- aCCUCCGGCGCUguCCUCGCgacgugaGGgaUCCc -3' miRNA: 3'- aGGGGGCCGCGG--GGAGCGg------CCacAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 116863 | 0.66 | 0.558914 |
Target: 5'- gUCCCCCGuaGCCCUccucuUCGCCGc---CCg -3' miRNA: 3'- -AGGGGGCcgCGGGG-----AGCGGCcacaGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 29396 | 0.67 | 0.549899 |
Target: 5'- -aCCCCGGUGCCUCgUGCCuugGGU-UCCc -3' miRNA: 3'- agGGGGCCGCGGGGaGCGG---CCAcAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 158774 | 0.67 | 0.546306 |
Target: 5'- cCCCCaCGGCcuGCCCCaugucuaacaccgCGCCGGgacCCa -3' miRNA: 3'- aGGGG-GCCG--CGGGGa------------GCGGCCacaGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 119006 | 0.67 | 0.54093 |
Target: 5'- -aCCCgGGUGCCCCUUcCUGGgaUCCu -3' miRNA: 3'- agGGGgCCGCGGGGAGcGGCCacAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 12649 | 0.67 | 0.54093 |
Target: 5'- cCCUCCGGCGUCUUUCacGCCGauuucGUGaUCCu -3' miRNA: 3'- aGGGGGCCGCGGGGAG--CGGC-----CAC-AGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 293 | 0.67 | 0.532899 |
Target: 5'- uUCCCCCGcgguccccagggccGuCGUCCCUCGCCcccGGgcguugcuuuucgugUGUCCc -3' miRNA: 3'- -AGGGGGC--------------C-GCGGGGAGCGG---CC---------------ACAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 229772 | 0.67 | 0.532899 |
Target: 5'- uUCCCCCGcgguccccagggccGuCGUCCCUCGCCcccGGgcguugcuuuucgugUGUCCc -3' miRNA: 3'- -AGGGGGC--------------C-GCGGGGAGCGG---CC---------------ACAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 182934 | 0.67 | 0.53201 |
Target: 5'- gUCCCCGaacuCGCCgCgCUCGCgGGcGUCCg -3' miRNA: 3'- aGGGGGCc---GCGG-G-GAGCGgCCaCAGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 136009 | 0.67 | 0.526684 |
Target: 5'- aCCCCCGGCcgagguccggagcggGCCg--CGCCcGGUGcCCg -3' miRNA: 3'- aGGGGGCCG---------------CGGggaGCGG-CCACaGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 199141 | 0.67 | 0.523144 |
Target: 5'- --aCCCGGCGUaccgugucgCCC-CGCaCGGUGgUCCg -3' miRNA: 3'- aggGGGCCGCG---------GGGaGCG-GCCAC-AGG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 189739 | 0.67 | 0.52226 |
Target: 5'- gUCCCCGGCcaagaguGCCCCcccgUCuCCGGUGaaaggCCg -3' miRNA: 3'- aGGGGGCCG-------CGGGG----AGcGGCCACa----GG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 110099 | 0.68 | 0.496903 |
Target: 5'- cUCgCCCGGUGagggaCCCUCGUCGGaagcggCCg -3' miRNA: 3'- -AGgGGGCCGCg----GGGAGCGGCCaca---GG- -5' |
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1639 | 5' | -66.3 | NC_001347.2 | + | 135706 | 0.68 | 0.494311 |
Target: 5'- aUCCCCGGuCGCCCaccgCGgaagagccuaggaaCCGGgGUCCg -3' miRNA: 3'- aGGGGGCC-GCGGGga--GC--------------GGCCaCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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