miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1639 5' -66.3 NC_001347.2 + 129508 0.68 0.479743
Target:  5'- --gCgCGGCGCCgCCUCGUCGG-GUaCCu -3'
miRNA:   3'- aggGgGCCGCGG-GGAGCGGCCaCA-GG- -5'
1639 5' -66.3 NC_001347.2 + 76975 0.68 0.462877
Target:  5'- gUCUUgCCGGCGCCCgCcgUGCCGGUGa-- -3'
miRNA:   3'- -AGGG-GGCCGCGGG-Ga-GCGGCCACagg -5'
1639 5' -66.3 NC_001347.2 + 24517 0.68 0.462877
Target:  5'- gCCCgaGGUGCUCCUC-CUGGUG-CCu -3'
miRNA:   3'- aGGGggCCGCGGGGAGcGGCCACaGG- -5'
1639 5' -66.3 NC_001347.2 + 189847 0.68 0.443058
Target:  5'- gCCCUCGGU-CCCCgugagcgguagcgCGCCGGgucgccUGUCCg -3'
miRNA:   3'- aGGGGGCCGcGGGGa------------GCGGCC------ACAGG- -5'
1639 5' -66.3 NC_001347.2 + 171334 0.69 0.430114
Target:  5'- gUCUCCCGGCGgCUCUCGgacCUGG-GUCa -3'
miRNA:   3'- -AGGGGGCCGCgGGGAGC---GGCCaCAGg -5'
1639 5' -66.3 NC_001347.2 + 24655 0.69 0.398753
Target:  5'- cCUCCUGGCGCacauCCCggCGCUaGGUGUCa -3'
miRNA:   3'- aGGGGGCCGCG----GGGa-GCGG-CCACAGg -5'
1639 5' -66.3 NC_001347.2 + 38915 0.69 0.398753
Target:  5'- --aCCCGGCGCCag-CGCCaGGUacaGUCCg -3'
miRNA:   3'- aggGGGCCGCGGggaGCGG-CCA---CAGG- -5'
1639 5' -66.3 NC_001347.2 + 208262 0.69 0.391144
Target:  5'- cUCCCgCGGCaguuuccuccGCCgCCUCGCuuuccuccuCGGUGUUCa -3'
miRNA:   3'- -AGGGgGCCG----------CGG-GGAGCG---------GCCACAGG- -5'
1639 5' -66.3 NC_001347.2 + 23273 0.7 0.354551
Target:  5'- aCCCCC-GCGaCCCUCGCgCGGaGUCa -3'
miRNA:   3'- aGGGGGcCGCgGGGAGCG-GCCaCAGg -5'
1639 5' -66.3 NC_001347.2 + 104646 0.72 0.282832
Target:  5'- aCCCCUGG-GCCUCgcaaGCCGGcUGUCUg -3'
miRNA:   3'- aGGGGGCCgCGGGGag--CGGCC-ACAGG- -5'
1639 5' -66.3 NC_001347.2 + 130741 1.11 0.000521
Target:  5'- gUCCCCCGGCGCCCCUCGCCGGUGUCCg -3'
miRNA:   3'- -AGGGGGCCGCGGGGAGCGGCCACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.