miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1639 5' -66.3 NC_001347.2 + 293 0.67 0.532899
Target:  5'- uUCCCCCGcgguccccagggccGuCGUCCCUCGCCcccGGgcguugcuuuucgugUGUCCc -3'
miRNA:   3'- -AGGGGGC--------------C-GCGGGGAGCGG---CC---------------ACAGG- -5'
1639 5' -66.3 NC_001347.2 + 8481 0.66 0.562532
Target:  5'- aCCCCCGuaGUaggcaaCCUCGCcCauaggucuccgaacaGGUGUCCa -3'
miRNA:   3'- aGGGGGCcgCGg-----GGAGCG-G---------------CCACAGG- -5'
1639 5' -66.3 NC_001347.2 + 12649 0.67 0.54093
Target:  5'- cCCUCCGGCGUCUUUCacGCCGauuucGUGaUCCu -3'
miRNA:   3'- aGGGGGCCGCGGGGAG--CGGC-----CAC-AGG- -5'
1639 5' -66.3 NC_001347.2 + 23273 0.7 0.354551
Target:  5'- aCCCCC-GCGaCCCUCGCgCGGaGUCa -3'
miRNA:   3'- aGGGGGcCGCgGGGAGCG-GCCaCAGg -5'
1639 5' -66.3 NC_001347.2 + 24517 0.68 0.462877
Target:  5'- gCCCgaGGUGCUCCUC-CUGGUG-CCu -3'
miRNA:   3'- aGGGggCCGCGGGGAGcGGCCACaGG- -5'
1639 5' -66.3 NC_001347.2 + 24655 0.69 0.398753
Target:  5'- cCUCCUGGCGCacauCCCggCGCUaGGUGUCa -3'
miRNA:   3'- aGGGGGCCGCG----GGGa-GCGG-CCACAGg -5'
1639 5' -66.3 NC_001347.2 + 29396 0.67 0.549899
Target:  5'- -aCCCCGGUGCCUCgUGCCuugGGU-UCCc -3'
miRNA:   3'- agGGGGCCGCGGGGaGCGG---CCAcAGG- -5'
1639 5' -66.3 NC_001347.2 + 36527 0.66 0.586187
Target:  5'- gUCCgggCUCGGUGaCCUCUCgGUCGGcgUGUCCa -3'
miRNA:   3'- -AGG---GGGCCGC-GGGGAG-CGGCC--ACAGG- -5'
1639 5' -66.3 NC_001347.2 + 38915 0.69 0.398753
Target:  5'- --aCCCGGCGCCag-CGCCaGGUacaGUCCg -3'
miRNA:   3'- aggGGGCCGCGGggaGCGG-CCA---CAGG- -5'
1639 5' -66.3 NC_001347.2 + 39345 0.66 0.586187
Target:  5'- gCgCCCGGCGgCCCgCGggguucuacCCGGUGgacgCCg -3'
miRNA:   3'- aGgGGGCCGCgGGGaGC---------GGCCACa---GG- -5'
1639 5' -66.3 NC_001347.2 + 63753 0.66 0.612781
Target:  5'- aCCCUucgaucgCGGCGCCCCacUUGCCGcUGUa- -3'
miRNA:   3'- aGGGG-------GCCGCGGGG--AGCGGCcACAgg -5'
1639 5' -66.3 NC_001347.2 + 76975 0.68 0.462877
Target:  5'- gUCUUgCCGGCGCCCgCcgUGCCGGUGa-- -3'
miRNA:   3'- -AGGG-GGCCGCGGG-Ga-GCGGCCACagg -5'
1639 5' -66.3 NC_001347.2 + 86562 0.66 0.577062
Target:  5'- gCCCCacaugaugauggCGGCGCCUCgguauuuucccCGCCGGUGg-- -3'
miRNA:   3'- aGGGG------------GCCGCGGGGa----------GCGGCCACagg -5'
1639 5' -66.3 NC_001347.2 + 104646 0.72 0.282832
Target:  5'- aCCCCUGG-GCCUCgcaaGCCGGcUGUCUg -3'
miRNA:   3'- aGGGGGCCgCGGGGag--CGGCC-ACAGG- -5'
1639 5' -66.3 NC_001347.2 + 110099 0.68 0.496903
Target:  5'- cUCgCCCGGUGagggaCCCUCGUCGGaagcggCCg -3'
miRNA:   3'- -AGgGGGCCGCg----GGGAGCGGCCaca---GG- -5'
1639 5' -66.3 NC_001347.2 + 116688 0.66 0.558914
Target:  5'- aCCUCCGGCGCUguCCUCGCgacgugaGGgaUCCc -3'
miRNA:   3'- aGGGGGCCGCGG--GGAGCGg------CCacAGG- -5'
1639 5' -66.3 NC_001347.2 + 116863 0.66 0.558914
Target:  5'- gUCCCCCGuaGCCCUccucuUCGCCGc---CCg -3'
miRNA:   3'- -AGGGGGCcgCGGGG-----AGCGGCcacaGG- -5'
1639 5' -66.3 NC_001347.2 + 119006 0.67 0.54093
Target:  5'- -aCCCgGGUGCCCCUUcCUGGgaUCCu -3'
miRNA:   3'- agGGGgCCGCGGGGAGcGGCCacAGG- -5'
1639 5' -66.3 NC_001347.2 + 126095 0.66 0.60451
Target:  5'- aUCCCCCucucGGCGCUCaUCGCCa--GUCUg -3'
miRNA:   3'- -AGGGGG----CCGCGGGgAGCGGccaCAGG- -5'
1639 5' -66.3 NC_001347.2 + 129508 0.68 0.479743
Target:  5'- --gCgCGGCGCCgCCUCGUCGG-GUaCCu -3'
miRNA:   3'- aggGgGCCGCGG-GGAGCGGCCaCA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.