miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16390 5' -55.4 NC_004084.1 + 27465 0.66 0.766567
Target:  5'- gGGAGACGGUCG-GCGu--CCUCgagCUc -3'
miRNA:   3'- gCCUCUGUCAGUgCGCucuGGAGa--GG- -5'
16390 5' -55.4 NC_004084.1 + 20685 0.67 0.70464
Target:  5'- gCGGuGACcucGGUCugGCccuccuggagGAuGACCUCUUCa -3'
miRNA:   3'- -GCCuCUG---UCAGugCG----------CU-CUGGAGAGG- -5'
16390 5' -55.4 NC_004084.1 + 27696 0.67 0.70464
Target:  5'- -cGAGACAgcGUCACGCGAcGCUgUUCCc -3'
miRNA:   3'- gcCUCUGU--CAGUGCGCUcUGGaGAGG- -5'
16390 5' -55.4 NC_004084.1 + 51015 0.67 0.694016
Target:  5'- aGGAGAUcagGGUCgucgACGuCGAGGCCgaUCCg -3'
miRNA:   3'- gCCUCUG---UCAG----UGC-GCUCUGGagAGG- -5'
16390 5' -55.4 NC_004084.1 + 37288 0.67 0.683335
Target:  5'- aGGAGAUcGUCAgGCGGuACUUC-CCg -3'
miRNA:   3'- gCCUCUGuCAGUgCGCUcUGGAGaGG- -5'
16390 5' -55.4 NC_004084.1 + 43821 0.67 0.672606
Target:  5'- gGGAGAUGGaUCauucguggGCGCGAGACa--UCCg -3'
miRNA:   3'- gCCUCUGUC-AG--------UGCGCUCUGgagAGG- -5'
16390 5' -55.4 NC_004084.1 + 13526 0.68 0.640239
Target:  5'- gCGGuucGCAgGUCACGCc--ACCUCUCCa -3'
miRNA:   3'- -GCCuc-UGU-CAGUGCGcucUGGAGAGG- -5'
16390 5' -55.4 NC_004084.1 + 23845 0.69 0.586271
Target:  5'- uGGAGGCAGUCGcCGCcAGcGCC-CUCg -3'
miRNA:   3'- gCCUCUGUCAGU-GCGcUC-UGGaGAGg -5'
16390 5' -55.4 NC_004084.1 + 8046 0.69 0.554265
Target:  5'- aGGcaACGGUaGCGUGGGACCUC-CCg -3'
miRNA:   3'- gCCucUGUCAgUGCGCUCUGGAGaGG- -5'
16390 5' -55.4 NC_004084.1 + 9407 0.7 0.492036
Target:  5'- gGGAGA-GGUCuCGCGuGACUgUCUCCg -3'
miRNA:   3'- gCCUCUgUCAGuGCGCuCUGG-AGAGG- -5'
16390 5' -55.4 NC_004084.1 + 19404 0.71 0.462139
Target:  5'- aGuGAGACAGUCGCccguCGAucgucgucGACCUCUUCa -3'
miRNA:   3'- gC-CUCUGUCAGUGc---GCU--------CUGGAGAGG- -5'
16390 5' -55.4 NC_004084.1 + 30597 0.72 0.387475
Target:  5'- gCGGGGugAgGUgGCGCGGGAUCUuCUCg -3'
miRNA:   3'- -GCCUCugU-CAgUGCGCUCUGGA-GAGg -5'
16390 5' -55.4 NC_004084.1 + 8182 0.74 0.321196
Target:  5'- aGGAuGCGGUC-CGCaaGGGCCUCUCCc -3'
miRNA:   3'- gCCUcUGUCAGuGCGc-UCUGGAGAGG- -5'
16390 5' -55.4 NC_004084.1 + 9322 1.11 0.00088
Target:  5'- cCGGAGACAGUCACGCGAGACCUCUCCc -3'
miRNA:   3'- -GCCUCUGUCAGUGCGCUCUGGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.