Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 36502 | 0.66 | 0.771522 |
|
Target: 5'- gACUACuGGGGccgaUCGAAacGAGUCCGCg -3' miRNA: 3'- -UGAUGcCUCCac--AGCUUa-CUCGGGCG- -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 29907 | 0.67 | 0.74073 |
|
Target: 5'- --cGCaGAGGUGaaCGugcGAGCCCGCg -3' miRNA: 3'- ugaUGcCUCCACa-GCuuaCUCGGGCG- -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 3347 | 0.67 | 0.74073 |
|
Target: 5'- gACUuCGuGA--UGUCGGAguaGAGCCCGCu -3' miRNA: 3'- -UGAuGC-CUccACAGCUUa--CUCGGGCG- -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 56947 | 0.68 | 0.676507 |
|
Target: 5'- gGCgACGGcc--GUCGAGccgGAGCCCGCg -3' miRNA: 3'- -UGaUGCCuccaCAGCUUa--CUCGGGCG- -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 51317 | 0.69 | 0.621726 |
|
Target: 5'- gGCgACcGAGGcGaUCGAGUGcGCCCGCg -3' miRNA: 3'- -UGaUGcCUCCaC-AGCUUACuCGGGCG- -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 42251 | 0.7 | 0.556368 |
|
Target: 5'- --aACGGuGGUgGUCGAGUGAuGCUCGa -3' miRNA: 3'- ugaUGCCuCCA-CAGCUUACU-CGGGCg -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 52818 | 0.73 | 0.378097 |
|
Target: 5'- --aGCGGAGGUcGUCGA---GGUCCGCu -3' miRNA: 3'- ugaUGCCUCCA-CAGCUuacUCGGGCG- -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 4933 | 0.77 | 0.218341 |
|
Target: 5'- cCUGCuuguGGAGGUGcCGGAUGuGCUCGCg -3' miRNA: 3'- uGAUG----CCUCCACaGCUUACuCGGGCG- -5' |
|||||||
| 16391 | 3' | -54.5 | NC_004084.1 | + | 9748 | 1.11 | 0.000985 |
|
Target: 5'- uACUACGGAGGUGUCGAAUGAGCCCGCu -3' miRNA: 3'- -UGAUGCCUCCACAGCUUACUCGGGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home