miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16392 3' -61.4 NC_004084.1 + 56932 0.66 0.419431
Target:  5'- --gCCGG-AGCCCGCGAacgGGUCCAg -3'
miRNA:   3'- uagGGCCuUCGGGCGCUccgCUAGGU- -5'
16392 3' -61.4 NC_004084.1 + 10536 0.66 0.392689
Target:  5'- cGUCCUGGAucGCCuCGCG-GGCu-UCCGg -3'
miRNA:   3'- -UAGGGCCUu-CGG-GCGCuCCGcuAGGU- -5'
16392 3' -61.4 NC_004084.1 + 39375 0.66 0.392689
Target:  5'- cUCUCGGugcucgacgaucGAGUCCGCGAcGCGAUCg- -3'
miRNA:   3'- uAGGGCC------------UUCGGGCGCUcCGCUAGgu -5'
16392 3' -61.4 NC_004084.1 + 39128 0.67 0.362098
Target:  5'- -aCCCGGAgagccugaaguauaaAGCUCGCGAgGGCGAc--- -3'
miRNA:   3'- uaGGGCCU---------------UCGGGCGCU-CCGCUaggu -5'
16392 3' -61.4 NC_004084.1 + 29371 0.67 0.327017
Target:  5'- -gCCCGGGAuCCCGCGucccuccuggaAGGUGAUgCCGc -3'
miRNA:   3'- uaGGGCCUUcGGGCGC-----------UCCGCUA-GGU- -5'
16392 3' -61.4 NC_004084.1 + 29678 0.69 0.256869
Target:  5'- -cUCCGGggGUUCGCGAcGCGGUCgCGg -3'
miRNA:   3'- uaGGGCCuuCGGGCGCUcCGCUAG-GU- -5'
16392 3' -61.4 NC_004084.1 + 42388 0.69 0.243801
Target:  5'- cAUCCUcgaGGAGGCCCGCGcagucacGGGCGGagguggCCGa -3'
miRNA:   3'- -UAGGG---CCUUCGGGCGC-------UCCGCUa-----GGU- -5'
16392 3' -61.4 NC_004084.1 + 58298 0.7 0.238371
Target:  5'- cGUUCCGGGAGCCCGCacGGCcAUCg- -3'
miRNA:   3'- -UAGGGCCUUCGGGCGcuCCGcUAGgu -5'
16392 3' -61.4 NC_004084.1 + 27632 0.71 0.199529
Target:  5'- cGUCCgGGAGGCCCuuguGCGcGGCcaccGGUCCAu -3'
miRNA:   3'- -UAGGgCCUUCGGG----CGCuCCG----CUAGGU- -5'
16392 3' -61.4 NC_004084.1 + 44932 0.71 0.18949
Target:  5'- cUCCUGGAAG-UCGCGGGcCGAUCCGa -3'
miRNA:   3'- uAGGGCCUUCgGGCGCUCcGCUAGGU- -5'
16392 3' -61.4 NC_004084.1 + 48872 0.73 0.135949
Target:  5'- cGUCCCGG-GGCUCGCGAcgaugcacgacggcaGGCGAUCa- -3'
miRNA:   3'- -UAGGGCCuUCGGGCGCU---------------CCGCUAGgu -5'
16392 3' -61.4 NC_004084.1 + 10447 1.06 0.000428
Target:  5'- cAUCCCGGAAGCCCGCGAGGCGAUCCAg -3'
miRNA:   3'- -UAGGGCCUUCGGGCGCUCCGCUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.